Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1925 ATGGCGATGGAAGTGGAGCAGAATCAGAATCAACAATTAGGGTTTCCCTTCTGGAAACCGCTTCGCCGCAGGTTCGGACCCGACTCTCCTTTCTTCGCTCCCGGCAACCTCGAACGAGAACTTCTTGTCAAAcagGTTGCTTTGGAGTTAACAGAAGAGAAGCAGCAGCTTGAGAAATGGATGCAAGAGGAAGGAAGGGAAGTCTTTTGTCCCATTGTTGGTTGCGGTGCACGCTTGACTTCAATGGAGGACTTTGAAAATCACTATAATGCAAGGCATACTGCATCCTGTTCTGTGTGTTCAAGAGTCTACCCAACATCTCGTTTGCTCAGCATACATGTATCCGAAGTGCATGATTCTTTCTTTCAGGCAAAAGTTGCACGTGGTTACGATATGTATGAATGCTTGGTGGAAAGGTGTGGTTTGAAATTCAAAAGCTACAATAGTAGGCAGCAGCATCTGGTTGACAAGCATAAATTCCCCACCTCATTTGACTTTTTCAAGAAGGCTCAGCCGTCAAAGAAACAGAGATTGAAGTCCCAACGCAAACAAGCTGTTCGTAAGGAGGATGCTTCAGGAATGATGGAAGTGGAAAATGCAGCCATGGATGACCTTGTTTCAGCAGTCTCTAAATTGAGCACTTCTGACTCGACCCCTTCATCTATCAGCTTTGGTCGCCGCCACAAAGGCTTCTCATTCGTCCCACGAGCTGTTCAGCGTGGAGGTGGATCAAAGTCAAACTCAGCAGCATCTATGACCAAGAGATAA 768 0.4609 MAMEVEQNQNQQLGFPFWKPLRRRFGPDSPFFAPGNLERELLVKQVALELTEEKQQLEKWMQEEGREVFCPIVGCGARLTSMEDFENHYNARHTASCSVCSRVYPTSRLLSIHVSEVHDSFFQAKVARGYDMYECLVERCGLKFKSYNSRQQHLVDKHKFPTSFDFFKKAQPSKKQRLKSQRKQAVRKEDASGMMEVENAAMDDLVSAVSKLSTSDSTPSSISFGRRHKGFSFVPRAVQRGGGSKSNSAASMTKR 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1925 255 MobiDBLite consensus disorder prediction 171 191 - -
Ssu4g1925 255 ProSitePatterns Zinc finger C2H2 type domain signature. 97 118 IPR013087 -
Ssu4g1925 255 PANTHER ZINC FINGER PROTEIN 511 10 240 - -
Ssu4g1925 255 Coils Coil 43 63 - -
Ssu4g1925 255 PANTHER UNCHARACTERIZED 10 240 IPR039258 -
Ssu4g1925 255 MobiDBLite consensus disorder prediction 233 255 - -
Ssu4g1925 255 ProSitePatterns Zinc finger C2H2 type domain signature. 135 158 IPR013087 -
Ssu4g1925 255 ProSitePatterns Zinc finger C2H2 type domain signature. 70 93 IPR013087 -
Ssu4g1925 255 SMART c2h2final6 68 93 IPR013087 -
Ssu4g1925 255 SMART c2h2final6 95 118 IPR013087 -
Ssu4g1925 255 SMART c2h2final6 133 158 IPR013087 -
Ssu4g1925 255 MobiDBLite consensus disorder prediction 241 255 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g1925 1 253 C2H2 Transcription Factor Family AT5G14140 61.977 5.57e-116 331
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Ssu4g1925 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1925 - - gmx:100819557 452.595