Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1924 ATGGAGATCACAAGATTAACATTAATGGCTTTGTTGATGATGGCTTTCACGATGCTTATATCTAAGGGAGAAGGCCAATTAGTAGAGAATTTCTATAGTTCAACTTGTCCAAATGTAGAATCCATCGTGACCCAGGCAGTGACTAACAAGTTTACCCAGACCATCACAACTGGACAAGCGACTCTGCGTCTATTCTTCCATGACTGCTTTGTTGAGGGATGTGATGCCTCTGTTATAATCGCCTCGCCAAATGGGGACGCAGAGAAGGATGCCACGGAAAATCTTTCGCTTCCAGGAGATGGGTTTGACACCGTGATCAAGGCCAAGCAAGCAGTGGAAGCTGCATGCCCTGGAGTGCTTGGAGGCCCTTCATTCAACGTAGAGCTTGGACGCAGAGACGGGCTTATTTCCAAGGCATCCCGCGTGGAAGGAAAACTTCCGAAAGCAAACTTCAATCTGGACCAACTCAACGCCCTCTTCGCGAAGCACGGCCTGACCCAAACCGACATGATAGCCCTCTCCGGAGCCCACACCGTGGGGTTCTCGCACTGCGACCAGTTCGCGAACCGTTTATACTCGTTCTCTTCCTCTTCTGCCGTGGACCCCACTCTGGACCCCACCTACGCCCAGGATTTGATGGCGGGGTGCCCTCGAAACCCCGACCCCACCATAGCGGTTCCCCTGGACCCGCAATCCCCTGCGGCGTTCGACAACGTGTATTACCAGGACCTGCTCTCCGGGAAAGGGTTGCTCACCTCGGACCAGGTGCTGTTCACGGACGCCGCGTCGCAGCCTACGGTGGTTCGGTTTGCGAACAACGCTGCGGACTTCAATGCAGCGTTTGTCGCGGCCATGAGGAAGCTCGCAAGGGTCGGGGTCAAGACTGGGAAGGACGGAGAGATTCGGAGGGATTGCACGGCCTTCAATTCTTCAACTTGTCCAAACGTAGAATCCATCGTGACACAGGCAGTGACTAACAAGTTTACCCAGACACTCACAACTGGACAAGCAACTCTGCGTCTATTCTTCCATGACTGCTTTGTTGAGGGATGTGATGCCTCTGTTATAATCGCCTCGCCAAATGGGGACGCAGAGAAGGATGCCCCGGAAAATCTTTCCCTAGCTGGGGATGGGTTTGACACTGTGATCCAGGCAAAGGAAGCAGTGGAAGCTACCTGCCCTGGAGTGGTCTCATGCGCAGACATTTTGGCACTCGCTACCAGAGACGTCATAGGCTTGCTAGGAGGCCCTTCATTCAACGTAGAGCTTGGACGCAGAGACGGGCTCATTTCCAAGGCATCCGCTGTGGAAGGAAACCTTCCGAAAGCAAACTTCAATCTGGACCAACTCAACGCGCTCTTCGCGAAGCACGGCCTGACCCAAACCGACATGATAGCCCTCTCCGGAGCCCACACCGTGGGGTTCTCACACTGCGACCAGTTCACGAACCGTTTATACTCGTTCAAACCCTCCTCTCCCGTGGACCCCACTCTGGACCCCACCTACGCCCAAGATCTGATGGCAGAGTGCCCTCGAAATCCCGACCCCACCGTTGCGATTCCTCTGGACTTTCAAACCCCTGCGTCTTTTGACAACGTGTATTACCAAAACTTGCTCTCTGGGAAAGGGTTACTCACTTCGGACCAAGTGTTATTTACGGACCCTACGTCACAGCCTACGGTGGTTCAGTTTGCGAACAACGCTGGGGACTTCAACGCAGCGTTTGTCGCGGCCATGAGGAAGCTCGGAAGGGTCGGGGTCAAGACCGGGAAGGAGGGAGAGATTAGGAGGGATTGCGCGACGTTCAATTCGTGA 1815 0.5416 MEITRLTLMALLMMAFTMLISKGEGQLVENFYSSTCPNVESIVTQAVTNKFTQTITTGQATLRLFFHDCFVEGCDASVIIASPNGDAEKDATENLSLPGDGFDTVIKAKQAVEAACPGVLGGPSFNVELGRRDGLISKASRVEGKLPKANFNLDQLNALFAKHGLTQTDMIALSGAHTVGFSHCDQFANRLYSFSSSSAVDPTLDPTYAQDLMAGCPRNPDPTIAVPLDPQSPAAFDNVYYQDLLSGKGLLTSDQVLFTDAASQPTVVRFANNAADFNAAFVAAMRKLARVGVKTGKDGEIRRDCTAFNSSTCPNVESIVTQAVTNKFTQTLTTGQATLRLFFHDCFVEGCDASVIIASPNGDAEKDAPENLSLAGDGFDTVIQAKEAVEATCPGVVSCADILALATRDVIGLLGGPSFNVELGRRDGLISKASAVEGNLPKANFNLDQLNALFAKHGLTQTDMIALSGAHTVGFSHCDQFTNRLYSFKPSSPVDPTLDPTYAQDLMAECPRNPDPTVAIPLDFQTPASFDNVYYQNLLSGKGLLTSDQVLFTDPTSQPTVVQFANNAGDFNAAFVAAMRKLGRVGVKTGKEGEIRRDCATFNS 604
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1924 604 PRINTS Plant peroxidase signature 415 430 IPR000823 GO:0004601|GO:0006979|GO:0020037
Ssu4g1924 604 PRINTS Plant peroxidase signature 377 390 IPR000823 GO:0004601|GO:0006979|GO:0020037
Ssu4g1924 604 PRINTS Plant peroxidase signature 537 554 IPR000823 GO:0004601|GO:0006979|GO:0020037
Ssu4g1924 604 PRINTS Plant peroxidase signature 313 332 IPR000823 GO:0004601|GO:0006979|GO:0020037
Ssu4g1924 604 PRINTS Plant peroxidase signature 396 406 IPR000823 GO:0004601|GO:0006979|GO:0020037
Ssu4g1924 604 PRINTS Plant peroxidase signature 337 357 IPR000823 GO:0004601|GO:0006979|GO:0020037
Ssu4g1924 604 PRINTS Plant peroxidase signature 577 590 IPR000823 GO:0004601|GO:0006979|GO:0020037
Ssu4g1924 604 PRINTS Plant peroxidase signature 462 474 IPR000823 GO:0004601|GO:0006979|GO:0020037
Ssu4g1924 604 PRINTS Plant peroxidase signature 521 536 IPR000823 GO:0004601|GO:0006979|GO:0020037
Ssu4g1924 604 ProSitePatterns Peroxidases active site signature. 335 346 IPR019794 GO:0004601
Ssu4g1924 604 Gene3D - 30 307 - -
Ssu4g1924 604 SUPERFAMILY Heme-dependent peroxidases 26 309 IPR010255 GO:0004601|GO:0006979|GO:0020037
Ssu4g1924 604 ProSitePatterns Peroxidases proximal heme-ligand signature. 169 179 IPR019793 -
Ssu4g1924 604 PRINTS Haem peroxidase superfamily signature 415 427 IPR002016 GO:0004601|GO:0006979|GO:0020037
Ssu4g1924 604 PRINTS Haem peroxidase superfamily signature 463 478 IPR002016 GO:0004601|GO:0006979|GO:0020037
Ssu4g1924 604 PRINTS Haem peroxidase superfamily signature 335 349 IPR002016 GO:0004601|GO:0006979|GO:0020037
Ssu4g1924 604 PRINTS Haem peroxidase superfamily signature 523 538 IPR002016 GO:0004601|GO:0006979|GO:0020037
Ssu4g1924 604 PRINTS Haem peroxidase superfamily signature 397 414 IPR002016 GO:0004601|GO:0006979|GO:0020037
Ssu4g1924 604 ProSiteProfiles Plant heme peroxidase family profile. 26 309 IPR002016 GO:0004601|GO:0006979|GO:0020037
Ssu4g1924 604 CDD secretory_peroxidase 308 599 IPR033905 GO:0004601|GO:0042744
Ssu4g1924 604 PANTHER PEROXIDASE 11 310 - -
Ssu4g1924 604 PANTHER - 11 310 IPR000823 GO:0004601|GO:0006979|GO:0020037
Ssu4g1924 604 ProSitePatterns Peroxidases proximal heme-ligand signature. 463 473 IPR019793 -
Ssu4g1924 604 PANTHER PEROXIDASE 307 604 - -
Ssu4g1924 604 Pfam Peroxidase 321 567 IPR002016 GO:0004601|GO:0006979|GO:0020037
Ssu4g1924 604 Pfam Peroxidase 44 273 IPR002016 GO:0004601|GO:0006979|GO:0020037
Ssu4g1924 604 Gene3D - 308 603 - -
Ssu4g1924 604 CDD secretory_peroxidase 26 308 IPR033905 GO:0004601|GO:0042744
Ssu4g1924 604 SUPERFAMILY Heme-dependent peroxidases 308 603 IPR010255 GO:0004601|GO:0006979|GO:0020037
Ssu4g1924 604 Gene3D Peroxidase, domain 2 441 582 - -
Ssu4g1924 604 Gene3D Peroxidase, domain 2 147 288 - -
Ssu4g1924 604 PANTHER - 307 604 IPR000823 GO:0004601|GO:0006979|GO:0020037
Ssu4g1924 604 ProSiteProfiles Plant heme peroxidase family profile. 308 603 IPR002016 GO:0004601|GO:0006979|GO:0020037
Ssu4g1924 604 ProSitePatterns Peroxidases active site signature. 58 69 IPR019794 GO:0004601
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1924 Ssu-Chr4 36302581 36337183 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g1924 308 603 Peroxidase AT5G14130 65.203 7.78e-137 402
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1924 K00430 - gmx:100791275 537.724
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g1924 4 36302581 36337183 Ssu4g1924 4 36302581 36337183 ECH