Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1914 ATGGATTGGGACGGGAAAGAGTTTGCTTGGGATCCACGTGGGTTGGAGCTAGAAGGGCAGAAGAATGAAGCAGCTTCAGTGGATTTGAGGCTTGGTGAGGCTTCTGAGGAAAAATCAGTCTCTGATGTTCCTAAGGACCCAAAAGACTCAAAAACTGAGTCATCTCCATCTGGGTCATCAAAAAGATCCCGCCTTCAGAATGGATCACAGAATTTGTGTTGTTCTGTTGATGGATGCAACTCTGACCTCAGTGACTGCAGAGAGTATCACAGGCGCCACAGGGTCTGTGAAAAGCACTCCAAAACCCCCGTTGTGTTGGTGGGGGGGAAACAGCAGCGGTTCTGCCAGCAATGCAGCAGGTTTCATTCACTTGGGGAGTTTGATGAGGTTAAGAGGAGTTGTAGGAAGCGGCTTGATGGGCATAACAGGCGCAGGAGGAAACCTCAGCCACCCTCTCTTTTCATGGCTGCTGAGAAATTCATGTACAATTACAAAGGACCTAGAATCCTACACTTTGGAGGCCCTGAGACATATGCCAACCCTATTATGAGAAATATGTGGCCTGCCCCTGCCAAAACTGGAGCTGAATCTGATTATGATCCTCCCCGACTCTTATACAGAATTGACAAGCATAAGCAAGATAAGTGTCATCCTCTTTGGCAAGAACATGACCCTAAAGTAGGCAATGGTAATGAAGCAATGCCTGGAACTCCCATCTGTCAGCCTATTCATGGCACCATTGCCCCATCAACGGGTGGAAAGAGCAGCCGAAAGCTCTCTTCTGATGCAAAGCCTGGATCCTTCAACTCAGGTTGTGCTCTCTATCTTCTGTCAACACTTCAATCACAAAGTCCAGAGTTGAGTATGGTGCAATCTAGCATCACCTGTCCAATGCAATCTCCATCAAGAGCTGTGGATTTTGATGCTGTGAATGAGGATGCATGCTCAGAAACGGCAAAAGATAGGCCTGGTGGTCAAGTATTGGTTCTTGATGCAAACACAACCAACCTTCATTACAATGGAATGCTGCAAATGGTCGATGGATTGGTTGAAAATGAGGACCCACTAACACTTCCCTTTTTCTGGGAGTAA 1092 0.4707 MDWDGKEFAWDPRGLELEGQKNEAASVDLRLGEASEEKSVSDVPKDPKDSKTESSPSGSSKRSRLQNGSQNLCCSVDGCNSDLSDCREYHRRHRVCEKHSKTPVVLVGGKQQRFCQQCSRFHSLGEFDEVKRSCRKRLDGHNRRRRKPQPPSLFMAAEKFMYNYKGPRILHFGGPETYANPIMRNMWPAPAKTGAESDYDPPRLLYRIDKHKQDKCHPLWQEHDPKVGNGNEAMPGTPICQPIHGTIAPSTGGKSSRKLSSDAKPGSFNSGCALYLLSTLQSQSPELSMVQSSITCPMQSPSRAVDFDAVNEDACSETAKDRPGGQVLVLDANTTNLHYNGMLQMVDGLVENEDPLTLPFFWE 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1914 363 Pfam SBP domain 74 147 IPR004333 GO:0003677
Ssu4g1914 363 MobiDBLite consensus disorder prediction 30 52 - -
Ssu4g1914 363 Gene3D - 65 135 IPR036893 GO:0003677|GO:0005634
Ssu4g1914 363 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 5 363 IPR044817 GO:0003677
Ssu4g1914 363 ProSiteProfiles Zinc finger SBP-type profile. 71 148 IPR004333 GO:0003677
Ssu4g1914 363 SUPERFAMILY SBT domain 72 153 IPR036893 GO:0003677|GO:0005634
Ssu4g1914 363 PANTHER TRANSCRIPTION FACTOR SBP FAMILY-RELATED 5 363 - -
Ssu4g1914 363 MobiDBLite consensus disorder prediction 1 66 - -
Ssu4g1914 363 MobiDBLite consensus disorder prediction 1 18 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1914 Ssu-Chr4 35966591 35969555 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g1914 74 174 SBP-box Gene Family AT5G50670 66.337 7.51e-43 150
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Ssu4g1914 SBP 1.2e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1914 - - gmx:100798317 664.07
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g1914 4 35966591 35969555 Ssu4g1914 4 35966591 35969555 ECH