Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1913 atgtatatatatccctttagacttcttttctctttcttcacatTCGATGTATGTATCCATTATATTAGCCACGTAACATTAAGCGCCGCCCCCACCATTTATATTTGCCCTTCATCTTTTTACCACAGCCACTTTTGTTTTCCTAATCCTCCTCCTCATCACatacatctttttcttttttttctagctACGAGCACTCAGATATATATAGTGACAAAGAAAATTGGGGTTGGGTTGATTTCAATGGAGAATTATTCCATGTTGTTCCCTTGTCCCAATTCTTCGAGCTACCCAATTTCAACCAGTGCTGTGGGTAGCTCTCAGCATGGTTTTGGTGGTCAAAGCTCCAATGCATTCCTTGGTCTAAGGCCTAGTAATGAAGGCAGTGATCGTGAGGAGAAGAGGGTAGAAGCAGGTGGCAGAGATGGCATGTTGTCTCAGATCAGTGGTGGTAGTATTAATGTGACTGATCAGTTAGGTGGTTcaggaaataataaaaagaaaggggaGAAAAAGGTTAGAAAGCCTAGATATGCTTTCCAAACGAGGAGCCAGGTTGATATACTTGATGATGGTTATCGATGGAGGAAGTATGGCCAAAAAGCTGTTAAAAACAACAAGTTCCCAAGGAGCTACTACCGGTGCACGCATCAAGGGTGCAATGTGAAGAAGCAAGTGCAACGCCTAACCAAAGACGAAGGGGTAGTGGTGACCACTTATGAGGGAGTGCACACACACCCAATTGAGAAGACAACAGACAACTTTGAGCACATTTTGAATCAGATGCAAATATACACTCCCTTTTGA 807 0.3879 MYIYPFRLLFSFFTFDVCIHYISHVTLSAAPTIYICPSSFYHSHFCFPNPPPHHIHLFLFFLATSTQIYIVTKKIGVGLISMENYSMLFPCPNSSSYPISTSAVGSSQHGFGGQSSNAFLGLRPSNEGSDREEKRVEAGGRDGMLSQISGGSINVTDQLGGSGNNKKKGEKKVRKPRYAFQTRSQVDILDDGYRWRKYGQKAVKNNKFPRSYYRCTHQGCNVKKQVQRLTKDEGVVVTTYEGVHTHPIEKTTDNFEHILNQMQIYTPF 268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1913 268 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 155 264 IPR044810 GO:0003700
Ssu4g1913 268 Pfam WRKY DNA -binding domain 190 247 IPR003657 GO:0003700|GO:0006355|GO:0043565
Ssu4g1913 268 SUPERFAMILY WRKY DNA-binding domain 181 248 IPR036576 GO:0003700|GO:0006355|GO:0043565
Ssu4g1913 268 ProSiteProfiles WRKY domain profile. 184 249 IPR003657 GO:0003700|GO:0006355|GO:0043565
Ssu4g1913 268 MobiDBLite consensus disorder prediction 121 175 - -
Ssu4g1913 268 MobiDBLite consensus disorder prediction 126 140 - -
Ssu4g1913 268 Gene3D WRKY domain 166 248 IPR036576 GO:0003700|GO:0006355|GO:0043565
Ssu4g1913 268 SMART WRKY_cls 189 248 IPR003657 GO:0003700|GO:0006355|GO:0043565
Ssu4g1913 268 PANTHER WRKY TRANSCRIPTION FACTOR 75-RELATED 155 264 - -
Ssu4g1913 268 MobiDBLite consensus disorder prediction 147 163 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1913 Ssu-Chr4 35771893 35773913 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g1913 177 268 WRKY Transcription Factor Family AT5G13080 88.043 8.81e-57 177
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Ssu4g1913 WRKY 3.4e-26 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1913 - - pvu:PHAVU_001G088200g 352.058
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g1913 4 35771893 35773913 Ssu4g1913 4 35771893 35773913 ECH