Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1911 ATGACGATCGCTTTAAAGCCACCGATTGGGTTGCGCTTCCTCCAACCACCACCTCTTTCGCCCGTTCCCATATCGTTCAAGTTCCCAACCACTCAGCTTCCCAGAATCAACTGCAACTACTCCTCTTTTGAAGTTAGAGATGTTAGCTATCAACCACCGGGGACTCAGCTTAGACTTCTAAACTCAGTTAGTTTTTCGCTTCCAGAGAAAAGTTTTGGTCTAATTTTCGGACAGAGTGGAAGTGGAAAAACAACTCTGTTGCAGCTTCTTGCAGGAATAAGCAAACCAACCTCGGGATCTATTTACATCCAAAAATATGGGAATGATGGAAATCCTAGTCATCCTCCAGAGCCCTTGGTGCCGGAAAGGGTTGGTATTGTCTTCCAGTTTCCTGAGAGGTATTTTGTGGCTGATAATGTGCTTGATGAAGTCACTTTTGGGTGGCCAAGGCAAAAGGGTAACCATCACCTGAGGGAGAATCTTGCTCTAGGGCTGCAGAGGGCAATTAACTGGGTTGGATTAAGTGGTATATCATTGGATAAAAATCCTCACTCCCTCAGTGGTGGTTACAAACGTCGTCTTGCCTTGGCAATACAATTAGTACAAACCCCTGATCTATTGATATTGGATGAACCACTTGCTGGACTCGATTGGAAAGCACGTGCAGATGTTGTGAAGCTTCTGAAGCATCTGAAAAAGGAATTAACTGTGCTAGTTGTTAGCCACGATTTGAGAGAGTTCGCAAGTCTAGTTGATCGATCATGGAGAATGGAAATGGGGGGCAACCTTAGAGAGGAATTTCTACCATTATAA 813 0.4453 MTIALKPPIGLRFLQPPPLSPVPISFKFPTTQLPRINCNYSSFEVRDVSYQPPGTQLRLLNSVSFSLPEKSFGLIFGQSGSGKTTLLQLLAGISKPTSGSIYIQKYGNDGNPSHPPEPLVPERVGIVFQFPERYFVADNVLDEVTFGWPRQKGNHHLRENLALGLQRAINWVGLSGISLDKNPHSLSGGYKRRLALAIQLVQTPDLLILDEPLAGLDWKARADVVKLLKHLKKELTVLVVSHDLREFASLVDRSWRMEMGGNLREEFLPL 270
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1911 270 SMART AAA_5 69 261 IPR003593 -
Ssu4g1911 270 PANTHER ABC TRANSPORTER I FAMILY MEMBER 11, CHLOROPLASTIC 29 266 - -
Ssu4g1911 270 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 42 260 IPR027417 -
Ssu4g1911 270 Pfam ABC transporter 60 213 IPR003439 GO:0005524
Ssu4g1911 270 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 43 268 IPR003439 GO:0005524
Ssu4g1911 270 Gene3D - 35 267 IPR027417 -
Ssu4g1911 270 CDD ABC_cobalt_CbiO_domain1 44 260 IPR015856 GO:0005524|GO:0016020|GO:0055085
Ssu4g1911 270 PANTHER HEAVY METAL TRANSPORTER 29 266 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Ssu4g1911 Ssu-Chr4 35669110 35678079 Transposed
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g1911 44 244 Calmodulin-binding Proteins AT2G36910 25.943 5.50e-11 60.8
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1911 - - vun:114196181 497.278
       

Event-related genes


Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g1911 4 35669110 35678079 Ssu4g1911 4 35669110 35678079 ECH