Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1908 ATGGATCCCAAGGGCTCAAAGCAGCCACAGGCACAGGAGGTGGTACCAAACTTCCTTAGCCTCCcccaacaaccacaacaacaacaaggtaACAAcgacagcaacaacaacaacatgggAGAGAACAAGCCAGCAGAGGTGAAGGATTTCCAGATAGTGGTCGCTGAGAAGGATGAGAGCAAGAAGCAGTTGGCACCAAAGAGGAGTTCCAACAAGGACAGGCACACCAAGGTTGAAGGGAGGGGGAGGAGGATAAGGATGCCTGCTCTGTGTGCGGCTAGAATCTTCCAGTTGACCAGAGAATTGGGTCACAAATCTGATGGGGAAACCATCCAGTGGCTTCTTCAGCAGGCTGAGCCATCCATAATAGCTGCTACTGGGACTGGCACAATCCCAGCATCTGCTTTGGCTGCTGCTGGCAACTCTGTCTCACCACAAGGGGCCTCTCTTTCATCAGGGTTGCACCATAAGATTGATGAATTGGGAGGGGCCAGTATGGGGTCAGGGAGCAGTAGGACCAGTTGGCAAATGGTTGGGGGGAATCTGGGGAGACCCCATGTGGCCACAGGCCTATGGCCCCCCCATGTCAGTGGATTTGGATTTCAGGCATCATCTGGTCCATCTAATGCCACCTTAGGCACTGAGAGCTCAAATTACCTGCAAAAAATTGGGTTCCCTGGCTTTGACTTGCCTGCTGCCACCAACATGGGTCACATGAGTTTCACCTCAATTTTGGGTGGTGGGGCTGCCCAGCAGATGCCTGGTTTGGAGCTGGGCTTGTCCCAGGATGGCCATATTGGGGTCTTGAATCCACAGGCCTTGAGCCAGATTTATCAGCAGATGGGTCAGGCTGGTAGAGTGCATCAGcatcagcagcagcagcagcagcagcaaacTCCTACTAAGGATGATTCTCAAGGCTCAGGACAGTAG 933 0.4855 MDPKGSKQPQAQEVVPNFLSLPQQPQQQQGNNDSNNNNMGENKPAEVKDFQIVVAEKDESKKQLAPKRSSNKDRHTKVEGRGRRIRMPALCAARIFQLTRELGHKSDGETIQWLLQQAEPSIIAATGTGTIPASALAAAGNSVSPQGASLSSGLHHKIDELGGASMGSGSSRTSWQMVGGNLGRPHVATGLWPPHVSGFGFQASSGPSNATLGTESSNYLQKIGFPGFDLPAATNMGHMSFTSILGGGAAQQMPGLELGLSQDGHIGVLNPQALSQIYQQMGQAGRVHQHQQQQQQQQTPTKDDSQGSGQ 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1908 310 MobiDBLite consensus disorder prediction 50 82 - -
Ssu4g1908 310 MobiDBLite consensus disorder prediction 10 42 - -
Ssu4g1908 310 PANTHER TRANSCRIPTION FACTOR TCP20-LIKE 22 309 - -
Ssu4g1908 310 ProSiteProfiles TCP domain profile. 71 125 IPR017887 -
Ssu4g1908 310 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 22 309 IPR005333 GO:0003700
Ssu4g1908 310 MobiDBLite consensus disorder prediction 281 310 - -
Ssu4g1908 310 MobiDBLite consensus disorder prediction 1 82 - -
Ssu4g1908 310 Pfam TCP family transcription factor 70 162 IPR017887 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1908 Ssu-Chr4 35433453 35434385 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g1908 1 310 TCP Transcription Factor Family AT3G27010 54.683 2.38e-87 262
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Ssu4g1908 TCP 1.5e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1908 - - vun:114191990 511.146
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g1908 4 35433453 35434385 Ssu4g1908 4 35433453 35434385 ECH