Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1903 ATGGAAATGGCTAATGAAAATGGTTTCCAACTTAGTGTGAAGCTAAGTGAACCAACCCTAGTTTTTCCTGCTGAAGAAACAAAGAAGGGTTTGTTTTTCCTATCTAACCTTGACCAGAACATTGCAGTGATTGTGAGAACTGTTTACTGCTTCAAAACGGCTGAGAGAGGGAATGAGAAGGCTGTGGATGTGATCAAGAATGCTTTGAAGAAGGTTCTTGTCCACTATTACCCTCTTGCTGGGAGGCTTACTATAAGCTCAGAGGGTAAACTCATAGTGGACTGCACAGGGGAGGGTGCCCTCTTTGTGGAGGCTGAAGCAAACTGTTCAATGGAAGAGATTGGTGATATCACAAAGCCAGACCCTGGGACTCTTGGTAAGCTTGTTTATGACATCCCTGGAGCAAAACACATTCTTCAGATGCCTCCTTTGGTTGCTCAGGTGACCAAGTTCAAATGTGGAGGCTTTGCTCTTGGGCTGTGCATGAATCACTGCATGTTTGATGGCATTGGTGCTATGGAGTTTGTGAACTCTTGGGGAGAAGTAGCCAGAGACTTGCCACTCTCAATCCCTCCAGTGCTAGACAGAAGCATACTGAAGGCAAGAAACCCACCAAAGATAGAGCACCTGCATCAAGAATTTGCTGACATTGAAGACAAGTCCAACACCAATAGCTTGTATGAGGATGAGATGGTCTACAGATCCTTCTGTTTTGATCCTGATAGACTAAAGCAACTGAAGATGAAGGCCATGGAAGATGGGGCTCTTGACACTTGCACAACATTTGAGGTCCTCTCAGCATTTGTATGGATAGCAAGAACCAAGGCACTAAAGATGTTGCCAGACCAACAAACAAAGCTTCTTTTTGCTGTTGATGGGAGGGCCAAGTTTAACCCCCCTCTTCCAAAAGGGTACTGTGGCAATGGAATTGTGCTAACAAATTCTGTGTGTCAAGCAGGTGAGCTAACAGACAAGCCCTTCTCATTTGCTGTGAGGCTCATTCAAGATGCAATCAAGATGGTCACAGACAGTTACATGAGATCAGCTATAGATTACTTTGAGGTGACAAGAGCAAGGCCTTCTCTTGCTTGCACACTTTTGATCACAACTTGGTCTAGGCTTTCCTTTCATACCACTGATTTTGGATGGGGAGAACCTGTGCTGTCAGGGCCAGTGTCACTGCCAGAGAAGGAAGTGATTCTGTTCCTTTCTCATGGCCAAGAGAGGAGAAACATCAATGTGCTTCTGGGTTTGCCAGCTCCTGTCATGAAGATTTTCCAAGATTTGATGCAGATATAG 1299 0.4503 MEMANENGFQLSVKLSEPTLVFPAEETKKGLFFLSNLDQNIAVIVRTVYCFKTAERGNEKAVDVIKNALKKVLVHYYPLAGRLTISSEGKLIVDCTGEGALFVEAEANCSMEEIGDITKPDPGTLGKLVYDIPGAKHILQMPPLVAQVTKFKCGGFALGLCMNHCMFDGIGAMEFVNSWGEVARDLPLSIPPVLDRSILKARNPPKIEHLHQEFADIEDKSNTNSLYEDEMVYRSFCFDPDRLKQLKMKAMEDGALDTCTTFEVLSAFVWIARTKALKMLPDQQTKLLFAVDGRAKFNPPLPKGYCGNGIVLTNSVCQAGELTDKPFSFAVRLIQDAIKMVTDSYMRSAIDYFEVTRARPSLACTLLITTWSRLSFHTTDFGWGEPVLSGPVSLPEKEVILFLSHGQERRNINVLLGLPAPVMKIFQDLMQI 432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1903 432 Pfam Transferase family 12 429 - -
Ssu4g1903 432 Gene3D - 8 213 IPR023213 -
Ssu4g1903 432 Gene3D - 214 431 IPR023213 -
Ssu4g1903 432 PANTHER TRICHOTHECENE 3-O-ACETYLTRANSFERASE 12 431 - -
Ssu4g1903 432 PANTHER OMEGA-HYDROXYPALMITATE O-FERULOYL TRANSFERASE 12 431 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1903 Ssu-Chr4 35330469 35332362 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g1903 11 430 Monolignol Biosynthesis Gene Families AT5G48930 34.028 1.31e-81 256
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1903 K15400 - gmx:100804504 832.017
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g1903 4 35330469 35332362 Ssu4g1903 4 35330469 35332362 ECH