Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1901 atgatcaattcaCTGTGTGGAAGCTCAGTGTCCCTCAAGAGTGAGAACAACTCTAGAACCAAACTCCAACCCACTTCTTCAAATGACTCAGTTTTGCAGTCTAAGAAAAATACCACTCAATCCTCTTCTGATCTAGACGCTAGTCTAACCCCACCAAGCTTAAACCTTCCTGCACTAAAATTTGACTTGGATGGAGATGTGGAAGTTCAATCCCCAGACAGTTCAATGTGGGAGTCCTTTTTTGCTGATCAATTAGATGCTGATTTCATGATCTCTTCCCCAGTGAGGAACGTTCCTTCCCCACAAGCCTCTTCCTACAATTGCAACTACAACTATGCTCAGGGAATGCAAGGCCAGAGTCTCTCAGGGTGTTCCCCACCTCGTTTTTCATCATCCCAAATTGGAGCCTTTAACAGCAGCCACAAAGGGAAAGGACTTAGCCCCCTCCACAGGGTGTTCAACTCACCAAACAACCAGTACATGCAGCATGTTGAAAACCTTTCACTGCCAGCAATAGAAGAGTTCTTGGAGGACTATCAAGGGTATTCATCAACCAAGGTGTCTTCTGACATTGCAAGTTCATCTGAATGCTTTGACATGTCAACTCAAATTCCATCCATTTTGGATAGCTTGACAATGCCCAATTCCTCAAGGTACCATGGATCAGTTGACGAAGAATCCTCAGTGCACTGTGCTGGCTCTTCTCAACTGTCCCAAGAGAGTGACATCTATCACCAGATGGGGTCCATGGCTAGTGCATCCCTGTCACAGGCTCTACAACAGGAACGCTACCAAGAGAAACAGCAAAAGCAGCAAGCACAACAACAGCACCGGCAAGAGAATTTGATGGTGCCTATTCCAATCGGAATCGTACAGGAGCAAGACAGCGGGCTCCAACTGGTGCACCTGCTTCTGGCATGCGCGGAGGCAGTAGCCAAAGAGGAATACATGCTAGCAAGAAGGTACCTCCACCATCTGAACAGAGTCGTGACTCCCCTGGGCGACTCCATGCAGCGCGTCGCGGCGTGCTTCACCGACTCCCTAGGCGCGAGACTCAGCTCCTCGACCCTCGCTCCCAAACCCGCCGCGACCCCGTCAAACTCGCTCGAAGTCCTCAAAGTGTACCAAATCGTCTACCAAGCCTGCCCCTACGTGAAGTTCGCCCACTTCACCGCCAACCAGGCCATCTTCGAGGCCTTCGAGTCCGAGGAGCGCGTCCACGTCATCGACCTCGACATCCTCCAGGGCTACCAGTGGCCCGCCTTCATGCAGGCCCTCGCCGCCCGCCCCGCCGGCGCGCCCTTCCTCCGCATCACCGGCGTCGGCCCCTCCCTCGACGCGGTCCGGGAAACCGGCCGCTGCCTCACCGACCTGGCCCACTCCCTCCGCATCCCCTTCGACTTCCACGCCGTCGGGGAGCAGCTGGAGGACCTCAGGCCCCACATGCTGCACCGCAGGGTCGGCGAGGCGCTGGCGGTCAACGCCGTCAACCGCCTCCACCGCGTCCCGGTCGGCCGCCTCGGCGGCCTGCTGGCCATGATCCGGGACCAGGCGCCGAGCGTGGTGACCCTCGTGGAGCAAGAGGCGAGCCACAACGGGCCCTACTTCCTGGGAAGGTTTCTGGAGGCGCTGCACTACTACTCCGCGATCTTCGACTCGCTGGACGCCACGTTCCCGGCGGAGTCGGCGCAGCGGGCGAAGGTGGAGCAGTACATATTCGCGCCGGAGATACGGAACATCGTGGCGTGCGAGGGCCCGGAGAGGTTCGAGCGGCACGAGAGGCTGGAGAGGTGGCGGAAGATCATGGAGGGGAAGGGGTTCAAGGGGGTGGCGCTGAGCCCGAACGCGGTGACGCAGTCCAAGATACTGCTGGGGCTGTACTCCTGTGACGGGTACAGGTTGACGGAGGACAAGGGGTGCCTGCTGCTCGGGTGGCAGGACAGGGCCATCGTTGCGGCCTCTGCGTGGCGGTGTTGA 1977 0.5731 MINSLCGSSVSLKSENNSRTKLQPTSSNDSVLQSKKNTTQSSSDLDASLTPPSLNLPALKFDLDGDVEVQSPDSSMWESFFADQLDADFMISSPVRNVPSPQASSYNCNYNYAQGMQGQSLSGCSPPRFSSSQIGAFNSSHKGKGLSPLHRVFNSPNNQYMQHVENLSLPAIEEFLEDYQGYSSTKVSSDIASSSECFDMSTQIPSILDSLTMPNSSRYHGSVDEESSVHCAGSSQLSQESDIYHQMGSMASASLSQALQQERYQEKQQKQQAQQQHRQENLMVPIPIGIVQEQDSGLQLVHLLLACAEAVAKEEYMLARRYLHHLNRVVTPLGDSMQRVAACFTDSLGARLSSSTLAPKPAATPSNSLEVLKVYQIVYQACPYVKFAHFTANQAIFEAFESEERVHVIDLDILQGYQWPAFMQALAARPAGAPFLRITGVGPSLDAVRETGRCLTDLAHSLRIPFDFHAVGEQLEDLRPHMLHRRVGEALAVNAVNRLHRVPVGRLGGLLAMIRDQAPSVVTLVEQEASHNGPYFLGRFLEALHYYSAIFDSLDATFPAESAQRAKVEQYIFAPEIRNIVACEGPERFERHERLERWRKIMEGKGFKGVALSPNAVTQSKILLGLYSCDGYRLTEDKGCLLLGWQDRAIVAASAWRC 658
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1901 658 Coils Coil 256 276 - -
Ssu4g1901 658 MobiDBLite consensus disorder prediction 258 278 - -
Ssu4g1901 658 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 32 656 IPR005202 -
Ssu4g1901 658 PANTHER GRAS FAMILY PROTEIN RAM1 32 656 - -
Ssu4g1901 658 MobiDBLite consensus disorder prediction 1 50 - -
Ssu4g1901 658 Pfam GRAS domain family 300 657 IPR005202 -
Ssu4g1901 658 ProSiteProfiles GRAS family profile. 291 657 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1901 Ssu-Chr4 35279390 35282494 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g1901 288 658 GRAS Transcription Factor Family AT1G66350 43.351 9.90e-100 313
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Ssu4g1901 GRAS 1.2e-129 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1901 - - gmx:100805039 1073.92
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g1901 4 35279390 35282494 Ssu4g1901 4 35279390 35282494 ECH