Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1897 ATGGAGAATAACCTTGTCGAAAATTCCGACAATAATAACGCCGCCGGTGACACGCTGCATCCTCCGATAGAAGCCGATCCCAACCCTGACGGTGCCGCCGCCGAAGCGGAACCACCAGAGTCGTCGCCACATGAGGGAGATCATGCGGACGACGAGAAGAAAGAAGAGGTTGTGGTGTCTCCTCCACCGAGTCTCGAGAAGGTTTCAGAAGATATCGACCAATTTTTGGTGACTCTGCAGCCGAAAAACGATGAAAACAACGATAGCAGTAAAGGAAACGAGAACTTTGAGATTCCTGGCTTTGTTGAGAGGTACTTGAATGTGGTGGAAGAGAAGATAGTGAAGTATGAAGCAGGGGAAGGCAAAGCCAAATGGGGAGAGGTTGCGGAGGAAGATTCGTGGCTGCTGGAAACCGCAGATCGGATTTCGAAGCTGATGAGATTGCTGACTCATCGTCGTGATCGCGAACCGGAGAAAGAGATCAACGGTGGAAAAGACTCGCTGGTGAACCGCGTTACATCCATCCACCAGCGTGCGATGTCGTATTTGGAGGAGGACTTCCGGTTGCTGATGGAAGAATCTAGAATCCCAACAGAATTGGATCCCGGAgggaataacaacaacaatcagAACAGCGGTGACCCCAAAGGGAAACACGTGGCACCGGAAGAACAAGAGGTGCAAGATCAAGAAGCTGGAGAACACGACACGAGTTTCCCAGGTTACTCGGAGGAGGCCATTTCCAGCCTGAGAAAAATCGCCGGCGAGATGTTATCCGGCGGCTACGAATCGGAGTGCTGCCAGGTGTACATCATCTCGCGGAGGAACGTGTTCGAGGAGATTCTCCAGAAGCTGGGGTTAGAGAGGATCAGCATCGACGAGATGGTGCAGAAGGTGCAGTGGGAGACTCTGGCCAGGGACATGATCCCCGCCTGGATCAACACTCTCAAGCAGTGCGCGGCGGTGTATTTCCCCGGCGAGCGCCAGCTCGCCGGGGCAGTGTTCGCCGCGCACCCCTCCGTCGCGGCAGGGCTCTTCAGCAGCCTCTCCCGCGGCGTGGTGATTCAGCTCCTCAACTTTGCGGAGGGCGCCGCCATGACTAGGCGCGCCGGCGAGAAGCTCTTCAAGCTCCTCGACATGTACGAGACCCTCCGGGACGTGATCCCGAAGGTGGACGGATTATTCCCGGAGGAATCCGTCGAGGAGCTGAAGACGGAGATAAGCCTCGCCAAGTCGCGACTTGGCGAGGCGGCCATCTCCATCTTCTGCGACCTCGAGAACCAGATTAAGTCAGAGACCGCGAGAACCGCGGTCCCCGGAGGCGCAGTGCACCCCCTCACACGCTACATCATGAACTACCTCAACATAGCAGGGGACTACAAGGAAACTTTGGAGCAAGTGTTCAAGGAGCATTCGAAGATCGAGCGCGCGGACTCGACCAGCAGGCCGCAGCGCGAGAACGACGGCGTTTCTGGGAAGGAATCGTCGTCCCCGTTCGCGGAGCAGGTGATGAGGGTGATGGACTTGCTGGACTCGAGCCTCGACGGGAAGGCACGTTTATACAAAGACGTGGCGCTGAGCAATTTCTTCATGATGAACAACGGAAGGTACATCCTGCAGAAGATAAAGGGGTCGAGCGAGATGAGCCAGGTGATGGGCGACACATGGATCAGGAAAAAGTCTTCGGAGCTGAGGAATTACCACAAGAACTACCAGCGGGAGACGTGGAACAGGGTGCTGGCGTGTCTGAACCACGAAGGGCTGAGCGTGAACGGGAAGGTGCAGAAGCCGGTGCTGAAGGAGCGGTTCAAGAGCTTCAACGCGTTGTTCGACGATATTCACAGGACGCAGAGCACCTGGGTGGTGAAGGACGAGCAGCTTCAGTCGGAGCTTAGGGTTTCCATTTCCGCGGTCGTAATTCCAGCCTACAGGTCCTTCATTGGGAGGTTCGCGCAGATTTTCGACCCGGGGAGACAGACCGAGAAGTACATAAAGTACCAAGCTGAAGACATAGAGACTTATATTGATGACTTGTTTGAGGGGAAGCCTCACCAGTCCATCGCTAGAAGgaaaacataa 2079 0.5474 MENNLVENSDNNNAAGDTLHPPIEADPNPDGAAAEAEPPESSPHEGDHADDEKKEEVVVSPPPSLEKVSEDIDQFLVTLQPKNDENNDSSKGNENFEIPGFVERYLNVVEEKIVKYEAGEGKAKWGEVAEEDSWLLETADRISKLMRLLTHRRDREPEKEINGGKDSLVNRVTSIHQRAMSYLEEDFRLLMEESRIPTELDPGGNNNNNQNSGDPKGKHVAPEEQEVQDQEAGEHDTSFPGYSEEAISSLRKIAGEMLSGGYESECCQVYIISRRNVFEEILQKLGLERISIDEMVQKVQWETLARDMIPAWINTLKQCAAVYFPGERQLAGAVFAAHPSVAAGLFSSLSRGVVIQLLNFAEGAAMTRRAGEKLFKLLDMYETLRDVIPKVDGLFPEESVEELKTEISLAKSRLGEAAISIFCDLENQIKSETARTAVPGGAVHPLTRYIMNYLNIAGDYKETLEQVFKEHSKIERADSTSRPQRENDGVSGKESSSPFAEQVMRVMDLLDSSLDGKARLYKDVALSNFFMMNNGRYILQKIKGSSEMSQVMGDTWIRKKSSELRNYHKNYQRETWNRVLACLNHEGLSVNGKVQKPVLKERFKSFNALFDDIHRTQSTWVVKDEQLQSELRVSISAVVIPAYRSFIGRFAQIFDPGRQTEKYIKYQAEDIETYIDDLFEGKPHQSIARRKT 692
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1897 692 MobiDBLite consensus disorder prediction 472 489 - -
Ssu4g1897 692 MobiDBLite consensus disorder prediction 217 233 - -
Ssu4g1897 692 MobiDBLite consensus disorder prediction 200 215 - -
Ssu4g1897 692 MobiDBLite consensus disorder prediction 1 16 - -
Ssu4g1897 692 PANTHER EXOCYST COMPLEX PROTEIN EXO70 52 689 IPR004140 GO:0000145|GO:0006887
Ssu4g1897 692 MobiDBLite consensus disorder prediction 472 497 - -
Ssu4g1897 692 PANTHER EXOCYST SUBUNIT EXO70 FAMILY PROTEIN 52 689 - -
Ssu4g1897 692 SUPERFAMILY Cullin repeat-like 136 680 IPR016159 -
Ssu4g1897 692 MobiDBLite consensus disorder prediction 197 241 - -
Ssu4g1897 692 MobiDBLite consensus disorder prediction 1 96 - -
Ssu4g1897 692 Pfam Exo70 exocyst complex subunit 311 677 IPR046364 GO:0000145|GO:0005546|GO:0006887
Ssu4g1897 692 MobiDBLite consensus disorder prediction 40 60 - -
Ssu4g1897 692 Gene3D Exocyst complex component Exo70 108 689 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1897 Ssu-Chr4 35109882 35111960 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g1897 64 692 EXO70 exocyst subunit family AT5G13990 52.730 0.0 649
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1897 K07195 - gmx:100820172 1028.85
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g1897 4 35109882 35111960 Ssu9g0324 9 16314767 16316878 PCT