Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1888 ATGGGTAGCTGTCCTTGTTTCGGGTTGAGGAAGAAGAGCAAAGGGAAGAACGCCAAGGGTCAGGGGGAAGAAAACAAGAATCGCCAACCTGTAGAGAATACTGATGTCTCTGAAACATCTTCAGAACTTAGATCAGAAGAAAACCCAACAGAGGAGAGTGACAGTTCTAATAAGGCTCGGATATTTACCTTCCGAGAGCTTGCAAcagcaacaaaaaattttagggatGAAACCTTTATTGGGCAAGGTGGATTTGGCATTGTTTACAAAGGAacgatagataaaataaatcagGTTGTAGCTGTTAAAAGACTTGATACTACTGGTGTCCAAGGGGAGAAAGAATTTCTGGTGGAAGTTCTCATGCTTTCTCTTCTACGCCATTCCAACCTTGTTAATATGATTGGTTACTGTGCTGAAGGGGATCAACGTCTTCTTGTGTATGAGTACATGCCCTTGGGATCCTTAGAATCTCATCTTCATGATGTTTCACCTGATGAAGACCCACTTGATTGGAATACTAGAATGATGATAGCTTGTGGAGCAGCGAAAGGACTAAATTATCTGCACAATGAAGCAAAGCCTTCTGTTATATACCGGGATCTAAAATCATCCAACATACTGTTGGATGAAGGTTTCCATCCAAAACTTTCTGATTTTGGGCTTGCAAAATTTGGTCCAACTGGAGACCAATCATATGTTGCCACTAGGGTCATGGGAACACAAGGTTACTGTGCCCCTGAATATGCCACTAGTGGAAAATTAACAATGAGATCTGACATTTACAGTTTTGGGGTTGTGTTATTGGAACTAATTACTGGACGCAGAGCATACAATGATACCCGTGGCCCTGAAAAGCATCTTGTAGACTGGGCACGCCCAATGTTTAGAGACAAAAGGAGTTTTCCAAGATTGGCAGATCCACGGCTGAAAGGTCACTACCCAGGATCTGGTCTATCGATGGCCATTGAATTGGCAGCCATGTGTCTTCGAGAAGAGCCACGTCATCGGCCTAATGCAGGTGATATAGTGGAAGCTCTAGAATTCTTGTCATCCAAGCAGTATACCCCAAAAGGATCCAATACAGTCAACACAGCAGTGATGGAGAGTGGAGTATCCCCAAAAGAAATATCTGCGGTTTTGCATAAAGACTCACAAAGAGAGCGAGCTGTTGCAGAGGCCAAGCTGTGGGGGGAGACATGGAGGCAGAGACGACAAAGTGAGCAAAGTAGTCCTGAGGAAGCAAATAGGTAG 1254 0.4274 MGSCPCFGLRKKSKGKNAKGQGEENKNRQPVENTDVSETSSELRSEENPTEESDSSNKARIFTFRELATATKNFRDETFIGQGGFGIVYKGTIDKINQVVAVKRLDTTGVQGEKEFLVEVLMLSLLRHSNLVNMIGYCAEGDQRLLVYEYMPLGSLESHLHDVSPDEDPLDWNTRMMIACGAAKGLNYLHNEAKPSVIYRDLKSSNILLDEGFHPKLSDFGLAKFGPTGDQSYVATRVMGTQGYCAPEYATSGKLTMRSDIYSFGVVLLELITGRRAYNDTRGPEKHLVDWARPMFRDKRSFPRLADPRLKGHYPGSGLSMAIELAAMCLREEPRHRPNAGDIVEALEFLSSKQYTPKGSNTVNTAVMESGVSPKEISAVLHKDSQRERAVAEAKLWGETWRQRRQSEQSSPEEANR 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1888 417 MobiDBLite consensus disorder prediction 1 57 - -
Ssu4g1888 417 MobiDBLite consensus disorder prediction 397 417 - -
Ssu4g1888 417 MobiDBLite consensus disorder prediction 16 31 - -
Ssu4g1888 417 ProSitePatterns Serine/Threonine protein kinases active-site signature. 197 209 IPR008271 GO:0004672|GO:0006468
Ssu4g1888 417 SUPERFAMILY Protein kinase-like (PK-like) 52 350 IPR011009 -
Ssu4g1888 417 ProSitePatterns Protein kinases ATP-binding region signature. 80 103 IPR017441 GO:0005524
Ssu4g1888 417 PANTHER OS07G0668900 PROTEIN 5 366 - -
Ssu4g1888 417 SMART serkin_6 74 350 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu4g1888 417 MobiDBLite consensus disorder prediction 39 54 - -
Ssu4g1888 417 PANTHER OS07G0668900 PROTEIN 5 366 - -
Ssu4g1888 417 Gene3D Phosphorylase Kinase; domain 1 34 150 - -
Ssu4g1888 417 Pfam Protein kinase domain 75 345 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu4g1888 417 Gene3D Transferase(Phosphotransferase) domain 1 151 371 - -
Ssu4g1888 417 CDD STKc_IRAK 80 348 - -
Ssu4g1888 417 ProSiteProfiles Protein kinase domain profile. 74 350 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1888 Ssu-Chr4 34983576 34993143 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g1888 1 411 Glycoside Hydrolase AT3G07070 51.756 3.79e-144 415
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-1 Ssu4g1888 Pkinase 3.8e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1888 K13430 - gmx:100809298 704.131