Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1886 ATGGAGATCGTAAACCATGCCAAGGAAAAAACCATCACGTTGCCAGTTGGGGTAAGGTTCGACCCCACTGATGATATTCTCGTTTACTACCTGAGGAAGAAGGTCTTAGCTCAACCACTCCCTAATACTCTCATTCAAGACTATGATGTGTTTCAAACTGAACCATGGGAACTGCCAGGagGTGAAAAGCATTTGAATTGgcaaaagtttttcttttacaatactGAGGCTCGTGTGTTTGAAAACCCTGACAAGAGAACTGCTGGGAATGGCCAATGGAGAGCAGTGGAGAAAGACCAAGATGTTGAGCTCCCTACCAAACTGCAGTTGATTGGGAAGAGGAACACACTAGTTTTCTGGGAAGCCAAAGGCAAACGTTTTACTGAAACAAAATGGGTGATGCATGAGTTCCGCCTTGCCCCAATATCAAATCCACCTCAGATGACAATTTGGGCTGTGTACCGCATATTCGAGATGGAGAAAAAAATAGGGAAGAAGTCAAAAGGGTCTAGAGGGGAGACCTCCAATAGCAACAATGTTGGAAAAGCTTAG 552 0.4293 MEIVNHAKEKTITLPVGVRFDPTDDILVYYLRKKVLAQPLPNTLIQDYDVFQTEPWELPGGEKHLNWQKFFFYNTEARVFENPDKRTAGNGQWRAVEKDQDVELPTKLQLIGKRNTLVFWEAKGKRFTETKWVMHEFRLAPISNPPQMTIWAVYRIFEMEKKIGKKSKGSRGETSNSNNVGKA 183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1886 183 SUPERFAMILY NAC domain 12 157 IPR036093 GO:0003677|GO:0006355
Ssu4g1886 183 Gene3D NAC domain 23 164 IPR036093 GO:0003677|GO:0006355
Ssu4g1886 183 PANTHER NAC TRANSCRIPTION FACTOR-LIKE PROTEIN 14 168 - -
Ssu4g1886 183 Pfam No apical meristem (NAM) protein 15 139 IPR003441 GO:0003677|GO:0006355
Ssu4g1886 183 MobiDBLite consensus disorder prediction 164 183 - -
Ssu4g1886 183 ProSiteProfiles NAC domain profile. 14 159 IPR003441 GO:0003677|GO:0006355
Ssu4g1886 183 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 14 168 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1886 Ssu-Chr4 34873778 34874743 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g1886 1 167 NAC Transcription Factor Family AT5G13180 35.593 5.20e-30 108
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Ssu4g1886 NAM 1.8e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1886 - - ccaj:109807086 257.684