Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1885 ATGCCCTGCCACTGTGATTCATCCAAAGAGTTGAAACCAGTCCCTTGTTCTCCAAAGGCAAAGGTCTTTGGGTGGGTGACACTCTTTGAGATGGAGATCGTGAACGAAATCAAGGGCAAGACCTACAAGCTCCCAGTTGGGTACAGGTTTGACCCAACTGATGACATTCTTGTTGGTTACTACCTGAGGAAGAAGATCGTAGCTCAACCACTCCCTAATAACCTCATCCAAGACTGTGATGTTTTCCAAACTGAGCCTTGGGGGCTGCCGGGAGgtGGAAAGCATTTGAATTGGCAAAAGTTTTTCTTCTATGATACCAGGGCCCGTGTGTTTGAAAACCCTGACAAGAGAGGAGCTGGGAATGGCGAATGGCACGCAGTGGAGAAAGGCCAGGATGTTGAGTTCCCTAGCAAACAGCTGGTAGGGAAGAAGAACATTCTGGTTTTCTGGGAAGCCAGTGGTAACCGTTTTACCAAAACAAACTGGGTGATGCATGAGTTTCGCCTTGCCCCAAAATCAAGTCCATCTCAGATGTCACTTTTGGCTGTGTACCGCATATTCGAGATGAAGGAGGGAAGAAAGGGGAAGAAGGCAAAAGTGTCTCACGAGGTGGCCTCTAACAGCGGCAATGTTGGAGGAGCTATGGAGGCCACACCCACTGTCATTGATTTCACAATGGATAGTGGCACCGTGACTGGTCCTCCCTCTCCTGCGTCCCCATCAACCCCATCATGTTAG 738 0.4919 MPCHCDSSKELKPVPCSPKAKVFGWVTLFEMEIVNEIKGKTYKLPVGYRFDPTDDILVGYYLRKKIVAQPLPNNLIQDCDVFQTEPWGLPGGGKHLNWQKFFFYDTRARVFENPDKRGAGNGEWHAVEKGQDVEFPSKQLVGKKNILVFWEASGNRFTKTNWVMHEFRLAPKSSPSQMSLLAVYRIFEMKEGRKGKKAKVSHEVASNSGNVGGAMEATPTVIDFTMDSGTVTGPPSPASPSTPSC 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1885 245 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 44 196 - -
Ssu4g1885 245 Pfam No apical meristem (NAM) protein 45 169 IPR003441 GO:0003677|GO:0006355
Ssu4g1885 245 PANTHER NAC TRANSCRIPTION FACTOR-LIKE PROTEIN 44 196 - -
Ssu4g1885 245 ProSiteProfiles NAC domain profile. 44 189 IPR003441 GO:0003677|GO:0006355
Ssu4g1885 245 SUPERFAMILY NAC domain 41 187 IPR036093 GO:0003677|GO:0006355
Ssu4g1885 245 Gene3D NAC domain 53 193 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1885 Ssu-Chr4 34800992 34802632 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g1885 44 179 NAC Transcription Factor Family AT3G04070 35.211 4.14e-25 99.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Ssu4g1885 NAM 1.1e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1885 - - gmx:100305869 277.33