Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1875 ATGTTGCCCTGCGATTACTGCGACTCCAAACCCGCGTTGCTCTTCTGCAGAGCCGACTCGGCGAAACTGTGCCTGGTTTGCGACCAGCACGTGCACGCCGCCAACGCCCTCTCCCTCAAGCACGTGCGCTACCAGATTTGCGACGGCTGCAAGAGCGACACCGCCGCGGTGCGCTGCTCCACCGACAACCTCGTCCTCTGCCACCACTGCGACTCGGACGCCCACGGCGGCGGCGCCGTTGCCCACCACCATCGGCACCGCCTCCACGGCCTCTCCGGCTGCCCCTCCGTCCCCGAGATTGCCTCCGCGCTGGGCCTCGATCTCCGGGCCCGCGAGCCCGACGGGCCCGTGGTCCCCACCGCCCGCGGGAAGTTCAGGGACGACGTGTACGAGCAGGTGCTGGAAATCGCGAGGAAGAGGAACGAGGTCGCTGCCGAGAGCGTCGAACCCAAGTTCGGGGCCCAAAGCGACGCCGTTGACGAGGTGCTGCTGCAGCAAACGCCGTTCACGTCCTTGCTCATGTTGCCTAATTCCGAATCTGAATTTGACGCACGAAAAAGTGACGATAACGGTTACGGAACCGAAGCAGGGGATCTTCTCTGGAATTATGATCCCTCCTATCAGGCTCCTCAGGTGTGGGATTTTCAATTACAGAAATCAAGAGATTGCGATGACGCGAAAGTGGTGGCATTTGATGGTCTAGAAGTTCCAAAAACATTTCAGGATGTGCACAATATGAATTACTTGACAATTGGTGACGATATTCTATCAAGAAATAATCAATCAGATCAGTCATCATCAAGCCATGCGAAGAAGGAAGAAGGCAACAAAAAAGCTAGAGGTGGGTTATCGTCAGAGTCCAAATTGCTTGAATCCATACCGTACAGTAGCACCAACAATGTCCTAGTCATGGAGCATCTTGTGGGTGGGAATGAAAATGTTAGCACCTTAAAAGCCAGGGTTAGCTTGGAAGAGTTGGCTAAGAATAGAGGGGATGCCATGTTACGCTataaggagaagaagaaatctcGAAGGTACGATAAGCACATTCGCTATGAATCAAGGAAGGCCAGGGCTGATACTAGAAAGAGGGTGAGAGGGAGATTTGTGAAGGCAAGTGATGTTCAAGCATGA 1134 0.537 MLPCDYCDSKPALLFCRADSAKLCLVCDQHVHAANALSLKHVRYQICDGCKSDTAAVRCSTDNLVLCHHCDSDAHGGGAVAHHHRHRLHGLSGCPSVPEIASALGLDLRAREPDGPVVPTARGKFRDDVYEQVLEIARKRNEVAAESVEPKFGAQSDAVDEVLLQQTPFTSLLMLPNSESEFDARKSDDNGYGTEAGDLLWNYDPSYQAPQVWDFQLQKSRDCDDAKVVAFDGLEVPKTFQDVHNMNYLTIGDDILSRNNQSDQSSSSHAKKEEGNKKARGGLSSESKLLESIPYSSTNNVLVMEHLVGGNENVSTLKARVSLEELAKNRGDAMLRYKEKKKSRRYDKHIRYESRKARADTRKRVRGRFVKASDVQA 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1875 377 MobiDBLite consensus disorder prediction 353 370 - -
Ssu4g1875 377 ProSiteProfiles CCT domain profile. 330 372 IPR010402 GO:0005515
Ssu4g1875 377 ProSiteProfiles Zinc finger B-box type profile. 1 46 IPR000315 GO:0008270
Ssu4g1875 377 ProSiteProfiles Zinc finger B-box type profile. 42 88 IPR000315 GO:0008270
Ssu4g1875 377 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 2 375 - -
Ssu4g1875 377 MobiDBLite consensus disorder prediction 257 284 - -
Ssu4g1875 377 CDD Bbox1_BBX-like 3 46 - -
Ssu4g1875 377 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 14-RELATED 2 375 - -
Ssu4g1875 377 MobiDBLite consensus disorder prediction 353 377 - -
Ssu4g1875 377 Pfam CCT motif 330 372 IPR010402 GO:0005515
Ssu4g1875 377 MobiDBLite consensus disorder prediction 267 281 - -
Ssu4g1875 377 SMART bboxneu5 1 46 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1875 Ssu-Chr4 34361074 34364200 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g1875 1 374 C2C2-CO-like Transcription Factor Family AT2G33500 36.170 2.37e-70 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Ssu4g1875 CCT 1.7e-15 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1875 - - gmx:100801439 579.326
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g1875 4 34361074 34364200 Ssu4g1875 4 34361074 34364200 ECH