Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1867 ATGATGGATCAGCGACAGCGAGAGAAGCTGCTTCAGAAAACCGAGGCCTGTGGTTTGGTGGCAGGTGTTGGTGCGGAGCGTGGACTTGTCACCGTGCCAGGAGacaagaacaagaacaacaacaacaagataTCTCAACCTCATGGGTCGGGTCGGATCCACGACAACCACCTTGGTCTCGTTGCTGCTGTTACCACAACCTTCGGAACTGTTcagaggaagaagagaatggCGAGGCAAAGAAGATCCACCGCAACCACTAACCCCACTTTGTTGATGCCGATGCACCATCTCAACAACCATTTCCCCTCGAAGCATAAGCCTCGGTTTCCACCTCCGAGCTCTTCCGCGTCCTCGCACGTGCCACTCTCCTCACTCCCGTCTAATAAACCCTCCACAACTCTCCCGCCCGCACGTgAAATTGACCATAGAAGGTTGAGATTCCTTTTCCAAAAGGAGTTAAAGAACAGTGATGTTAGCTCCCTTAGGAGAATGATATTGCCAAAGAAAGCAGCAGAGGCTTTCCTTCCTGCCCTTGAATCAAAAGAAGGAATTGTAATCAGCATGGATGATATAGATGGTCTTCATGTATGGAGTTTCAAGTACAGGTTTTGGCCTAACAACAATAGTCGGATGTATGTACTTGAAAATACGGGAGACTTTGTCAACACACATGGCCTACGCTTTGGAGATTCCATTATGGTTTACCAAGATAGTCAAAACAACAATTATGTTATTCAGGCCAAAAAGGCTTCTGATCAGGATGAATTTATGGAAGAAACTAGTGATACCATCAATGATATCTTTCTTAATGATTATGAGGTGAACAAACCTGGTTGCTTCAATATAACATATCCTGCAGTGAATGATACAGGCATGTCATTCATATATGAGACTACCTTCTCAAATGACTCCCCACTTGATTTTTTGGGTGGATCAATGACCAATTTTTCAAGGATTGGACCAGTTGAAACCTTTGGCTCTGTTGAGAATTTGTCACTTGATGACTTCTATTAA 1017 0.4267 MMDQRQREKLLQKTEACGLVAGVGAERGLVTVPGDKNKNNNNKISQPHGSGRIHDNHLGLVAAVTTTFGTVQRKKRMARQRRSTATTNPTLLMPMHHLNNHFPSKHKPRFPPPSSSASSHVPLSSLPSNKPSTTLPPAREIDHRRLRFLFQKELKNSDVSSLRRMILPKKAAEAFLPALESKEGIVISMDDIDGLHVWSFKYRFWPNNNSRMYVLENTGDFVNTHGLRFGDSIMVYQDSQNNNYVIQAKKASDQDEFMEETSDTINDIFLNDYEVNKPGCFNITYPAVNDTGMSFIYETTFSNDSPLDFLGGSMTNFSRIGPVETFGSVENLSLDDFY 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1867 338 MobiDBLite consensus disorder prediction 31 54 - -
Ssu4g1867 338 MobiDBLite consensus disorder prediction 34 49 - -
Ssu4g1867 338 Pfam B3 DNA binding domain 150 247 IPR003340 GO:0003677
Ssu4g1867 338 ProSiteProfiles B3 DNA-binding domain profile. 150 252 IPR003340 GO:0003677
Ssu4g1867 338 SUPERFAMILY DNA-binding pseudobarrel domain 148 247 IPR015300 -
Ssu4g1867 338 MobiDBLite consensus disorder prediction 71 138 - -
Ssu4g1867 338 MobiDBLite consensus disorder prediction 111 135 - -
Ssu4g1867 338 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 64 338 IPR044800 GO:0003700
Ssu4g1867 338 Gene3D - 146 264 IPR015300 -
Ssu4g1867 338 CDD B3_DNA 148 250 IPR003340 GO:0003677
Ssu4g1867 338 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR FUS3 64 338 - -
Ssu4g1867 338 SMART B3_2 150 252 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1867 Ssu-Chr4 34109928 34113225 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g1867 49 338 B3 DNA Binding Superfamily AT3G26790 50.309 6.54e-89 267
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Ssu4g1867 B3 2.3e-15 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1867 - - gmx:100783961 537.339
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g1867 4 34109928 34113225 Ssu4g1867 4 34109928 34113225 ECH