Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1866 ATGGCGAGCAGGTACTGGACAGTGTCTCTTCCCGTCCCCAACTCCGCATCTCACCTCTGGAACCAATTGCAGGAACGCATCTCCAAGCATTCCTTCGACACTCCTCTTTACAGATTCAACATCCCCAACCTCCGCGTCGGAACCCTAgactctctcctctccctcagCGATGACCTCGCCAAGTCGAACAATTTCGTGGAAGGAGTGACGCACAAGATCAGGCGCCAGATTGAGGAGCTCGAGAGAGTTTCCGGCATAGACAGCGGCGGCCTCACCGTCGATGGCGTCCCCGTTGATTCCTACCTGACCAGGTTTGTTTGGGATGAGGCCAAGTACCCGACGATGTCGCCTTTGAAGGAGATCGTGGATGGTATTCATAGTCAAGTGGCAAAGATTGAGGATGATCTCAAGGTTCGTGTTTCTGAGTATAACAATATCCGCAGTCAGCTTAATGCTATCAACCGAAAGCAAACTGGAAGCTTAGCAGTCCGTGATCTTTCCAACCTGGTAAAACCTGAGGACATTATAACTTCAGAACATTTAACTACCCTCCTTGCAATTGTTTCCAAGTATTCACAGAAGGATTGGCTCTCAAGCTATGAAACATTGACAAGTTATGTGgttccCAGGTCTTCTAAGAAGTTGTATGAGGATAACGAATATTCTCTTTATACTGTAACACTCTTCAGTCGTGTTGCGGATAATTTTAGAACTAGTGCACGAGAAAAAGGGTTCCAaATTCGTGACTTTGAATACAGTCCAGAAACACATGAGAACCGAAAGCAGGAGTTAGATAAATTGATGCAAGATCAGGAAAGATTGAAGGCTTCTCTGTTGCAATGGTGCTATACCAGTTATGGAGagGTTTTCAGTTCCTGGATGCACTTTTGTGCTGTGCGTTTATTTGCTGAGAGCATTCTGAGATATGGTCTGCCACCATCTTTCTTGGCATGCGTTTTAGCTCCTTCTGTAAAATCTGAGAAGAAAGTACGTTCTATCCTTGAAGGGTTGAGTGATAGTGCAAACAGTGCATACTGGAAGACCGAGGATGAAGTAGGGGCTGGGATGGCTGGCCTAGCAGGTGATGCTGATGCCCACCCCTATGTTTCTTTCACTATCAATCTTGTTTGA 1131 0.45 MASRYWTVSLPVPNSASHLWNQLQERISKHSFDTPLYRFNIPNLRVGTLDSLLSLSDDLAKSNNFVEGVTHKIRRQIEELERVSGIDSGGLTVDGVPVDSYLTRFVWDEAKYPTMSPLKEIVDGIHSQVAKIEDDLKVRVSEYNNIRSQLNAINRKQTGSLAVRDLSNLVKPEDIITSEHLTTLLAIVSKYSQKDWLSSYETLTSYVVPRSSKKLYEDNEYSLYTVTLFSRVADNFRTSAREKGFQIRDFEYSPETHENRKQELDKLMQDQERLKASLLQWCYTSYGEVFSSWMHFCAVRLFAESILRYGLPPSFLACVLAPSVKSEKKVRSILEGLSDSANSAYWKTEDEVGAGMAGLAGDADAHPYVSFTINLV 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1866 376 Pfam V-ATPase subunit C 5 369 IPR004907 GO:0033180|GO:0046961|GO:1902600
Ssu4g1866 376 PANTHER V-TYPE PROTON ATPASE SUBUNIT C 1 375 - -
Ssu4g1866 376 Gene3D - 163 251 - -
Ssu4g1866 376 Coils Coil 257 277 - -
Ssu4g1866 376 CDD V-ATPase_C 5 373 IPR004907 GO:0033180|GO:0046961|GO:1902600
Ssu4g1866 376 PANTHER V-TYPE PROTON ATPASE SUBUNIT C 1 375 IPR004907 GO:0033180|GO:0046961|GO:1902600
Ssu4g1866 376 Gene3D Vacuolar atp synthase subunit c; domain 1 8 334 - -
Ssu4g1866 376 Gene3D - 41 312 - -
Ssu4g1866 376 SUPERFAMILY Vacuolar ATP synthase subunit C 2 375 IPR036132 GO:0015078|GO:0033180|GO:1902600
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1866 Ssu-Chr4 34092393 34097403 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g1866 1 375 Primary Pumps ATPases(2) AT1G12840 82.400 0.0 655
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1866 K02148 - gmx:100780187 706.827
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g1866 4 34092393 34097403 Ssu4g1866 4 34092393 34097403 ECH