Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1858 ATGGAGCGCTACACGCTGCCCGCACACACAGAAGGAGACGCGGCACCGTCGTGGGCCGGGCCCAACTCCGAAGCAGAGGACATTGCCATTGCCATGGGTGCCCCTATCCCTTCCTTTAAATCCATgcttcaaccacaaccacaacctgAATCTTGCTTTAACTTCAACTTCAACTTCAACTCTGGCATCAGTACTGTCCCCTTTGTTCCAAACATGGACTCTTTCCCTCTAGACCCCTTCTCGCCTTCACTTTCACTCCCTttcttcaacaacaacaacaaccagtTCGACCCGGGCTTTGACTTGGGCCTGGATACTGGGCTTCACTCTTCTGCTCCCCTTCTCTTTTCCCAGGCCCAGACGGGCTTCGAGTTCTCCGAACTCGAAGCCCTTGCTGGACCTGGGAATGCCCCGTTCTCGAACGGGGCAAAGACTCTGAAGCCTACCGAGGGGGCGCAGCCGACGCTGTTCCGGAAGCGGCGGGGGACGGCGGCCGAGATTCCGGGGCTGGAGACGGTGAGGAGGAAGGGGAGGAAGTGGGAGGAGGGAGAGGGTGAGGAAGGTAGCAGTGCTGACGTGGATGGTTCCGGGTTGAATTATGAGTCCGACGAGCAAAATGAGAATAATAACGGGAATGGTTTGAACCCGAGTGAGAGCGGTGGAGATCACAAGGGGAAGAAGAAGGGGCTGCCCGCCAAAAATCTCATGGCGGAGAGGCGCCGCAGGAAGAAGCTCAATGATAGGTTGTACATGCTCAGGTCTGTTGTGCCCAAGATTAGCAAgATGGATAGGGCTTCAATACTTGGGGATGCAGTTGACTACTTGAAGGAGTTGCTGCAGCGGATTAATGATCTTCATAACGAGCTGGAGTCAACTCCACCTGGCTCGTTGCTGCCACCTTCTACTTCTACAAGCTTTCACCCTTTGACACCCACCCCACCAACCCTTCCCTGCCGGGTCAAGGAGGAACTATACCCTGGCACCTTGCCAAGCCCTAAAAACCAAGCTGCAAAGGTTGAAGTCAGAGTAAGGGAAGGGAGAGCTGTCAACATTCATATGTTCTGCACCCGTCGACCGGGTCTTTTGCTTTCTACCATGAGGGCTTTGGATAACCTCGGATTGGATGTACAGCAGGCTGTTATTAGCTGTTTCAACGGCTTTGCTTTAGATGTGTTCAAAGCTGAGCAATGCAGAGAAGGCCAGGATGTCCTCCCTGAGCAAATTAAAGCGGTGCTCTTGGATTCAGTGGCCTTCCATGGTATGATGTGA 1269 0.5193 MERYTLPAHTEGDAAPSWAGPNSEAEDIAIAMGAPIPSFKSMLQPQPQPESCFNFNFNFNSGISTVPFVPNMDSFPLDPFSPSLSLPFFNNNNNQFDPGFDLGLDTGLHSSAPLLFSQAQTGFEFSELEALAGPGNAPFSNGAKTLKPTEGAQPTLFRKRRGTAAEIPGLETVRRKGRKWEEGEGEEGSSADVDGSGLNYESDEQNENNNGNGLNPSESGGDHKGKKKGLPAKNLMAERRRRKKLNDRLYMLRSVVPKISKMDRASILGDAVDYLKELLQRINDLHNELESTPPGSLLPPSTSTSFHPLTPTPPTLPCRVKEELYPGTLPSPKNQAAKVEVRVREGRAVNIHMFCTRRPGLLLSTMRALDNLGLDVQQAVISCFNGFALDVFKAEQCREGQDVLPEQIKAVLLDSVAFHGMM 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1858 422 Pfam Helix-loop-helix DNA-binding domain 236 278 IPR011598 GO:0046983
Ssu4g1858 422 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 91 422 - -
Ssu4g1858 422 MobiDBLite consensus disorder prediction 195 217 - -
Ssu4g1858 422 CDD bHLH_AtAMS_like 232 303 - -
Ssu4g1858 422 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 232 300 IPR036638 GO:0046983
Ssu4g1858 422 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 229 278 IPR011598 GO:0046983
Ssu4g1858 422 MobiDBLite consensus disorder prediction 139 239 - -
Ssu4g1858 422 MobiDBLite consensus disorder prediction 220 239 - -
Ssu4g1858 422 CDD ACT_UUR-ACR-like 351 392 - -
Ssu4g1858 422 SMART finulus 235 284 IPR011598 GO:0046983
Ssu4g1858 422 MobiDBLite consensus disorder prediction 1 21 - -
Ssu4g1858 422 PANTHER BHLH TRANSCRIPTIONAL FACTOR 91 422 - -
Ssu4g1858 422 MobiDBLite consensus disorder prediction 290 312 - -
Ssu4g1858 422 Gene3D - 223 292 IPR036638 GO:0046983
Ssu4g1858 422 MobiDBLite consensus disorder prediction 290 305 - -
Ssu4g1858 422 MobiDBLite consensus disorder prediction 171 186 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1858 Ssu-Chr4 33945818 33950119 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g1858 83 395 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G26744 63.975 5.65e-114 340
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Ssu4g1858 HLH 9.7e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1858 - - gmx:100804797 534.643
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g1858 4 33945818 33950119 Ssu4g1858 4 33945818 33950119 ECH
Ssu4g1858 4 33945818 33950119 Ssu9g0310 9 15736973 15740436 PCT