Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1850 ATGTCCATCTTGCCCTCACAAACCCAAGCGgcatcttcatcctcttcctctGCGCCATCTCCAAACCCTAATCCCCAGTATGGAATTGGAATCCCTCTTCCTCAacccttctcttctctctcctccCCTCTCCACCACGCTCTTGGATCTCTCCAGATCTCCAATAACCCAGGTTCATCGACTCCAGCTGCCCAAGATTCTGGGGGATCTTCCGAAAAGGTGACAGAACTAGGGTCTCCGAGTGGAGTGATGGGTTCACCTCAGCAGAACTCTAGAACACGTTCTAGGAGTCACAGGGGAAGACGGACAGGAACGGGAACGGATTCTTATCATAGGAATCAACAAACTCCTTGGTCTGTGAATTCTCATGGAATTGCTCCTTCGGCGGGGAGAAAAGCTCAGACTGTGAATGGGAATTACTTGCTGAATTTTCAGTATGACCCGATATCCCGTTCCCAACCACGGGGTCCTCCTCCTCCCCCTACGACAAGAAGGCATCGGAAGAGGAAACCGTATAACAAAGATTTGTTTTTGCAGGCGAATTACAAGTTCATGGTGCTAGATTCGGGAAATTATTCGCCTGAGTTGTTGGATCCAGATAAAATGTTGCAGTGGGAAGATATTATATGTGTGACATATTTGACCCCCTTTTCAGTTCAGTGTCCAATTTGTTTGGAGTATCCCCTGTGTCCGCAGATAACCTCATGTGGACATATTTTCTGTTTCCCATGTATTCTACAGTACTTAATGATGGGTGAAGAGGATCACAAAGGTGATTGCTGGAAAAGGTGTCCTTTGTGCTTTGTGATGATATCTGCCAACGATTTATATACAGTCCACATCACAAATGTTAAACAGTATCGAGTAGGAGATAATATTGAGTTCACCTGTTTAACGCGGAAAAAGGATTTGTTTACTCTgtcacataaaaataaacaagagaCAAATGTCACATCACGTGGCAATGCAGATATCTATGATCCCTTTTCTAAGTTCACTCTTACATCAGATGTAGATCTCTCAGTGAGACATGCAATATCCGATCTAGATGGTTGGCTGGCCAGAGCTGATTCAGGTCTTGTTGATGACCTGGAGAAGCTTCCTTATGTTTGTGCTGCAATGCAACAATTAGAACAGAGGAAGAGTTATTGGAGTGAGCACAGGTCTTGTGAGAGTGAAAAATCTTCTAAGCTTATTGATTATGGACATCAGATACCATCAACAGTTGCAAATTCTGTGGATACTGATGATGAAAACTGTTCTAATGGGTCAAGAGCTTCCTCTGCTGATTTCCATGACCAAAATAAGGTTATGATGTTGGATAAATCAACTGCTGGAGCCTGTTCGGATCAAAACTTGGATGTtgagaaagaattaatagagcaggaaataaatttatcttcttcttatgAGGAGAAAAAGGGTATTCAAAGGCATTCAGATGGTGTTGTTGGAGATGTGAAGGAAAATGATTCATACAGTTTCTACCAGGCTGCTGATGGTCAGCATCTAATTCTTCATCCTCTGAACATGAAGTGTTTGCTTCACCATTATGGGAGCTATGATATGCTTCCACACAGAATAAGTGGAAGGATTTTGCAATTGGAAACAGTTACTCAGTCTGAGGCCATGAGGAGGCGGTATCGATTCCTTAGTCATTTTCCATTAACCACAACATTTCAGCTTTGTGAAGTTGATTTGAGTGAGATGTTGCCTCCTGAAGCACTGGCCCCATTTATGGATGAAATCAAGAAGCGTGCAAATCAGAGGAAGCAGCTTGCAAAAAAGgaacggaaggaaaaaataaaggcTGAAGCTACTGCTACTTATTCTCTTCCCATAGCATTAAATTGTCAGTTTACTTCTCGCGACGATCCTCCAACATTCTCCATGGATGACTTTGAAGGTAATCTACTTTTTGGATGTTGGAAGAAGAAATTTGGCAGGATAAAAGTTCTGCtgttatttattaacaataCCTCAAGAGAGGGAAATTGTTAG 2001 0.3983 MSILPSQTQAASSSSSSAPSPNPNPQYGIGIPLPQPFSSLSSPLHHALGSLQISNNPGSSTPAAQDSGGSSEKVTELGSPSGVMGSPQQNSRTRSRSHRGRRTGTGTDSYHRNQQTPWSVNSHGIAPSAGRKAQTVNGNYLLNFQYDPISRSQPRGPPPPPTTRRHRKRKPYNKDLFLQANYKFMVLDSGNYSPELLDPDKMLQWEDIICVTYLTPFSVQCPICLEYPLCPQITSCGHIFCFPCILQYLMMGEEDHKGDCWKRCPLCFVMISANDLYTVHITNVKQYRVGDNIEFTCLTRKKDLFTLSHKNKQETNVTSRGNADIYDPFSKFTLTSDVDLSVRHAISDLDGWLARADSGLVDDLEKLPYVCAAMQQLEQRKSYWSEHRSCESEKSSKLIDYGHQIPSTVANSVDTDDENCSNGSRASSADFHDQNKVMMLDKSTAGACSDQNLDVEKELIEQEINLSSSYEEKKGIQRHSDGVVGDVKENDSYSFYQAADGQHLILHPLNMKCLLHHYGSYDMLPHRISGRILQLETVTQSEAMRRRYRFLSHFPLTTTFQLCEVDLSEMLPPEALAPFMDEIKKRANQRKQLAKKERKEKIKAEATATYSLPIALNCQFTSRDDPPTFSMDDFEGNLLFGCWKKKFGRIKVLLLFINNTSREGNC 666
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1850 666 MobiDBLite consensus disorder prediction 1 131 - -
Ssu4g1850 666 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 215 321 IPR013083 -
Ssu4g1850 666 PANTHER RING FINGER 10 FAMILY MEMBER 88 635 IPR039739 -
Ssu4g1850 666 MobiDBLite consensus disorder prediction 147 170 - -
Ssu4g1850 666 MobiDBLite consensus disorder prediction 35 93 - -
Ssu4g1850 666 MobiDBLite consensus disorder prediction 410 429 - -
Ssu4g1850 666 ProSiteProfiles Zinc finger RING-type profile. 221 267 IPR001841 -
Ssu4g1850 666 MobiDBLite consensus disorder prediction 107 123 - -
Ssu4g1850 666 MobiDBLite consensus disorder prediction 1 24 - -
Ssu4g1850 666 CDD RING-HC_RNF10 221 268 - -
Ssu4g1850 666 SMART ring_2 221 267 IPR001841 -
Ssu4g1850 666 ProSitePatterns Zinc finger RING-type signature. 236 245 IPR017907 -
Ssu4g1850 666 SUPERFAMILY RING/U-box 220 272 - -
Ssu4g1850 666 Pfam Zinc finger, C3HC4 type (RING finger) 221 267 IPR018957 GO:0046872
Ssu4g1850 666 Coils Coil 580 604 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g1850 129 636 C3H Transcription Factor Family AT3G26730 56.788 0.0 577
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1850 - - gmx:100798764 1025.39
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g1850 4 33863962 33871418 Ssu4g1850 4 33863962 33871418 ECH