Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1843 ATGGTTGTGCAATCTCTGGACGTTGTTCATCATCAGCATTTAATGGTTTCCACCAGAGCGGAGAAGAGTTCTGAAGCCAAAATCGCCGCGGAGAATGGCGGAAAAGGAGCTAAATCGGAGAAGAAATCGAGAGAATCGAATGGTTCGGCAATGCCGCGGAGGTCGAGTGCTAGAATTCAAGCGATGCAAAAAGCGGAGGAGGAGGCTCTTGCTCGACAAAAGGCGGAGGTAGTTGAAGAGAAAGACAAATGCAATGGCGAGGTGGCGGCGACGACGAAGGCGAAGAAGCGCAGTAGAAAAAGTGGCGGCGAGGAGAGTGTGGCGGAAGAAGAGGTTGTTTTGCCGCCGAAGAAAAAGCCGGTGGTGTGCGGCAAGGTGGAAGAAGAGAATGGAAAGGAGGAATTGGAAAATGCGGGTGGGGGTTTGGGGGAGAAGAGTGACTTGATTAAGGTCAAAGAGACGATAAGATTGTTTAACAAGCATTACCTTCATTTAGTTCAGgaagaagagaagaggtgTGGGAAGGCAGAGGCTGAGCGGAAAGCTGCTAAAAAAGGTTCTAAAAAGGGTTCTAAAAAGGATTCTAAATCGAAGAAAGGTGCTCCACCTGAAGATTCAAAGACCACTGCTAAACGACCAGATCTGAAGGCCATAACCAAGATGATGGAAAATAATGAGATACTGTACCCTGAGAAAAGGATTGGTCACATTCCAGGTATTGATGTTGGATATCAGTTCTATTCTCGTGCTGAAATGGTTGCAGTTGGTTTTCATAGCCACTGGTTAAATGGCATTGATTATATGGGCCTGTCCTATGCCAAAGCGTACAGCTATGAATTACCAGTTTCTGTTGCCATTGTTTTGTCGGGCATGTATGAGGATGATCTTGATAACGCTGAGGATGTTGTGTATACTGGTCAAGGTGGGCATAATCTGACTGGTGATAAGCGTCAAATTCGGGATCAAAAGTTGGAGCGTGGTAACCTGGCTCTCAAGAATTGTGCTGAGCAATGTGTGCCTGTTAGAGTCATTCGTGGTCATGAATCTTCAAGCAGTTACTCTGGTAAAGTATACACATATGATGGCTTGTACAAGGTTGTCAATTATTGGGCAGAGAAGGGAATATCTGGATTTACAGTCTACAAGTTTCGACTTAGGAGGCTTGAAGGGCAACCTACATTAACCACAAATcagGTATATTTTACTCATGGACGTGTGCCTCAATCTCTAGCAGAAATACGAGGATTGGTTTGTGAGGATATCACTGGAGGTCAAGAAGATATGCCCATTCTGGCtacaaatttggttgatgacCCCCCTGTTCCACCCACAGgtTTCACATATTGCAAGTCTGTTAAGGCTGCAAAAAATGTGAAGCTTCCCATGAATGCCACCGGATGCAAATGCAAAGGCATTTGTAATGACCCTACAACCTGTGCATGTGCGTTGCGTAATGGCTCTGATTTTCCCTATGTATCTCGGGATGGTGGCAGGTTAGTTGAAGCTAAAGATGTAGTTTTTGAATGTGGTCCCAAATGCGGTTGTGGTCCTGGCTGTGTGAACCGAACTTCTCAAAAAGGACTTAGATATCGTCTGGAGgtTTTCCGTACTGCAAAAAAAGGATGGGCTGTTAGATCCTGGGATTTTATACCTTCTGGAGCACCAGTTTGTGAGTACACAGGAATACTTGCTAGAACAGAAGATATGGACAGTGTATTggaaaacaattatatttttgagataGATTGCTTGCAAACGATCAAGGGGCTTGGTGGAAGAGAGAGGCGGTCACAAGATGGAGGGATTCCTGGAAATCTTTTGGACAAATATGATGATCAAAGTTCTGAAAGTGCGCCAGAGTTTTGTATTGATGCAGGATCTACTGGAAACATTGCTAGGTTTATAAACCATTGTTGTGAGCCTAATCTGTTTGTTCAATGTGTTTTGAGCGCCCACCATGATTTGAAATTGGCTCGTGTTATGCTGTTTGCTGCGGACAACATACCCCCTTTGCAGGAATTAACGTACGACTATGGTTATGCGCTTGATAGCGTCTTGGACTCCAGTGGGAAGATCAAGCAAATGCCATGCTATTGTGGAGCCGCAGACTGCAGGAAGCGATTATTCTAA 2130 0.4371 MVVQSLDVVHHQHLMVSTRAEKSSEAKIAAENGGKGAKSEKKSRESNGSAMPRRSSARIQAMQKAEEEALARQKAEVVEEKDKCNGEVAATTKAKKRSRKSGGEESVAEEEVVLPPKKKPVVCGKVEEENGKEELENAGGGLGEKSDLIKVKETIRLFNKHYLHLVQEEEKRCGKAEAERKAAKKGSKKGSKKDSKSKKGAPPEDSKTTAKRPDLKAITKMMENNEILYPEKRIGHIPGIDVGYQFYSRAEMVAVGFHSHWLNGIDYMGLSYAKAYSYELPVSVAIVLSGMYEDDLDNAEDVVYTGQGGHNLTGDKRQIRDQKLERGNLALKNCAEQCVPVRVIRGHESSSSYSGKVYTYDGLYKVVNYWAEKGISGFTVYKFRLRRLEGQPTLTTNQVYFTHGRVPQSLAEIRGLVCEDITGGQEDMPILATNLVDDPPVPPTGFTYCKSVKAAKNVKLPMNATGCKCKGICNDPTTCACALRNGSDFPYVSRDGGRLVEAKDVVFECGPKCGCGPGCVNRTSQKGLRYRLEVFRTAKKGWAVRSWDFIPSGAPVCEYTGILARTEDMDSVLENNYIFEIDCLQTIKGLGGRERRSQDGGIPGNLLDKYDDQSSESAPEFCIDAGSTGNIARFINHCCEPNLFVQCVLSAHHDLKLARVMLFAADNIPPLQELTYDYGYALDSVLDSSGKIKQMPCYCGAADCRKRLF 709
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1843 709 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 53 709 IPR025794 GO:0016571
Ssu4g1843 709 Pfam SET domain 541 679 IPR001214 GO:0005515
Ssu4g1843 709 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 52 708 - -
Ssu4g1843 709 SUPERFAMILY PUA domain-like 217 407 IPR015947 -
Ssu4g1843 709 SMART G9a_1 230 391 IPR003105 -
Ssu4g1843 709 MobiDBLite consensus disorder prediction 17 113 - -
Ssu4g1843 709 ProSiteProfiles Pre-SET domain profile. 465 527 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Ssu4g1843 709 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE, H3 LYSINE-9 SPECIFIC SUVH4 52 708 - -
Ssu4g1843 709 SMART preset_2 418 514 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Ssu4g1843 709 MobiDBLite consensus disorder prediction 176 215 - -
Ssu4g1843 709 ProSiteProfiles YDG domain profile. 235 387 IPR003105 -
Ssu4g1843 709 MobiDBLite consensus disorder prediction 17 48 - -
Ssu4g1843 709 SMART set_7 530 685 IPR001214 GO:0005515
Ssu4g1843 709 ProSiteProfiles SET domain profile. 530 679 IPR001214 GO:0005515
Ssu4g1843 709 Coils Coil 166 186 - -
Ssu4g1843 709 Gene3D SET domain 411 709 IPR046341 -
Ssu4g1843 709 ProSiteProfiles Post-SET domain profile. 693 709 IPR003616 -
Ssu4g1843 709 SUPERFAMILY SET domain 415 685 IPR046341 -
Ssu4g1843 709 Pfam SAD/SRA domain 234 391 IPR003105 -
Ssu4g1843 709 SMART PostSET_3 693 709 IPR003616 -
Ssu4g1843 709 Coils Coil 63 83 - -
Ssu4g1843 709 MobiDBLite consensus disorder prediction 196 215 - -
Ssu4g1843 709 Pfam Pre-SET motif 422 522 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Ssu4g1843 709 MobiDBLite consensus disorder prediction 65 113 - -
Ssu4g1843 709 Gene3D - 217 404 IPR036987 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1843 Ssu-Chr4 33700785 33721957 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g1843 221 709 EF-hand Containing Proteins AT5G13960 67.546 0.0 709
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Ssu4g1843 SAD_SRA 1.5e-49 CL0178
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1843 K11420 - gmx:100795584 1138.64