Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1837 ATggatcttctttttcttcttcggtcccttctcttcttcttcttcttcttcttcttcactttCCCTCACGCAAATGCCCTCAATGCCACGGTTCCTCGCGACGCATTGCCCCTTCTCAGCTTCAAACGCTTCGTCTCTTCCGACCCTTCCAACCTTCTCGCCGCCTGGACCAAACGCTCTTCCCCGAACCTCTGCCGCTGGCGCGGCGTCGCGTGCGGCGGCGGGACCCTCTCTGGCAGAGTCACCGCCCTGAACGTCACCGGCCTTCGCGGCGGCGAATTGTCGCCCTCCGTCGGAGACATGTCCCAGCTCCGAATCCTGTCCCTCGCCGGAAACATGTTCTCCGGCGAGATTCCGGCGAGCATAGGGAATCTCCGGTTTCTGGAGGTTCTCGAGCTGCAAGGGAACAACTTCTCGGGGAGAGTCCTCAACCAGATGAGTTCTGCTTTTCTTCAATCTCTTCGTTTTGTTAACCTCTCTGGCAATGCCTTCTCTGGTTCTATACCGGGTGAATTGGTTGGCACTGGGAGTTTGAAAATCGTTGATTTATCGAATAATCAGCTTTCTGGTGCGATTCCGTTGAATGGTACCTGTGATTCCTTGAAGCATTTGAGGTTGTCCCATAACTTTTTGACCGGGGAGATTCCACCCCAGATTGGGAAATGTAGAAACTTGAGGACCCTTTTGGTTGATGGGAACATCTTGGAAGGTAGAATCCCTTCTGAGATTGGGGGTGTTGTGGAACTTAGAGTTCTGGATGTTTCTAGAAACTCCCTCACCGGAAGGGTCCCCAAGGAGTTGGCCAATTGTGTGAAATTGTCTGTGCTTGTGCTTACTGATTTGTTCGAGGATCGCGATGAGGGAGGCTTGGAGGATGGATTTAGAGGAGAGTTCAATGCCTTTGTTGGGAGCATACCTCATGAAGTGTTGCTGCTTTCGAGTCTAAGGGTTTTGTGGGCGCCGAGAGCGAATCTTGATGGACGGCTGCCGAGTGGCTGGTCGGATTTTTGCTCTCTGAGGGTGCTCAATTTGGCGCAGAATTATGTTACTGGTGTTGTGCCTGAGAGGTTGGGGATGTGTGGAAATTTAAGTTTCTTGGACTTGAGTTCTAACAATTTGGTGGGGTATCTGCCTTCATTGCCTTGTATGATGTACTTCAATGTCAGCAGGAATAATATATCTGGTGTTCTTCAAGGGTTTAGGAAAGAAAGCTGTCGTGTGAGTGCACTAGACCCTTCATTCCTAGAATTGGATGGTTTTAATGATGATGCATACTTTAATATTCCTGGTTGGAGGTTTCAAAAGAATGCTCTCATTGGATTGGGTTTTGAAGAGACTAATACTATTGTTGTTAGCCATGATTTCAGTTGGAACAGTTTCGTGGGATCCTTACCTTTGTTCTCTCTTGGAGATAATCTTTTTAGTGCGACTCATAAAGTCTCCTATGCACTGTCtctcaataataataagttCAATGGAACTCTACCGTATCAGTTAGTTTCAAACTGTGATGACCTCGAGACTTTGTCAGTTAACTTGAGTGTGAACCAACTATCCGGTGGGAATTCCCAAGCATCGTTTTTGGGGTGCCTGAAGTTGACAGATTTTGAAGCAGCATACAACCAGATTGATGGGTCAATTGGACCTGGTATAGGTGACTTGATGATGCTTCAGCATCTTGATTTAAGTGGGAACAAACTATCTGGATCACTGCCTAAGCAGCTGGGAAAACTACAAAACATGAAATGGATGCTTCTGGGAGGAAACAATCTAACAGGGGAAATTCCTTTCCAACTTGGTCAATTGACTTCCCTTGCTGTTTTGAATCTGTCTCACAATGCTCTAGTGGGAACAATTCCCGTGAGTTTGTCAAATGCCAAAAGTCTTGAAATTCTGTTGCTAGATCACAACAACCTTTCTGGAGAAATACCTTTGACTTTTTCTACTCTTTCCAATCTTGTTCAACTGGATGTTTCTTTTAACAATCTTTCTGGTCATATTCCTCATCTTCAACACTCAAGTGATTGTGATTCCTATAAAGGAAATGCACACCTGCACTCTTGCCCCGATCCATATTCTGATTCACCTGCTTCTCTTCCAGTCCCCCTTGAAATCCAGCATGCGCATAGACAGAGGAAATTAAGGACATTGGTTATTGCTCTGGGCACTTCTGCTTCTGTGGCTCTCTGCACGCTTCTGGGAATAGTATTGGTGATCTTTTCTGGAAGGAGTAAATTTGGTCGGCTTAGCGGTATTAGAAGGCGACAGGTAGTGACTTTTCAAGATGTTCCAACTGAACTGAGTTACAACAGTGTGGTCACAGCTACTGGAAATTTCAGCATCCGGTATCTAATTGGCACAGGTGGCTTTGGGTCAACGTACAAGGCAGAACTGTCCCCAGGTTTTCTTGTTGCCATAAAGAGGTTGTCCATAGGTAGATTTCAAGGCATTCAACAGTTTGAAACAGAAATAAGGACATTAGGGAGAATTCGACACAAGAATCTCGTGACTCTTATTGGCTATTATGTAGGAAAGGCTGAAATGTTCTTAATTTACAACTACCTTTCTGGTGGGAACCTTGAAGCTTTCATACACGACAGATCAGGGAAAAATGTGCAGTGGCcagttatttacaaaatagcaAAAGACATAGCAGATGCCCTTGCTTACCTTCATTACTCTTGTGTTCCTCGCATTGTTCACCGGGATATCAAACCTAGCAACATCTTACTTGATGAAGATCTTAATGCCTACCTGTCCGATTTTGGCTTGGCACGACTGCTTGAGGTATCCGAAACCCATGCCACCACTGATGTGGCAGGCACATTTGGTTATGTTGCACCAGAATATGCCACCACTTGCAGGGTTTCTGACAAAGCAGATGTTTACAGCTTTGGTGTAGTGTTGTTAGAATTGATGTCAGGAAGAAAGTCACTTGATCCATCATTTTCTGAATATGGAAATGGATTCAATATCGTACCATGGGCAGAGCTGCTAATGACCGAAGGCCGTTGTTCCGAGCTATTTTCATCTACTTTGTGGGAAGCAGGGCCTAAGGAAAAATTGTTGGGGATTTTGAAGCTGGCATTAACATGCACAGAGGAGACTCTTTCTATTCGACCGTCAATGAAACAGGTTCTTGAGAAGTTGAAACAATTGAAAAGTTGA 3168 0.4419 MDLLFLLRSLLFFFFFFFFTFPHANALNATVPRDALPLLSFKRFVSSDPSNLLAAWTKRSSPNLCRWRGVACGGGTLSGRVTALNVTGLRGGELSPSVGDMSQLRILSLAGNMFSGEIPASIGNLRFLEVLELQGNNFSGRVLNQMSSAFLQSLRFVNLSGNAFSGSIPGELVGTGSLKIVDLSNNQLSGAIPLNGTCDSLKHLRLSHNFLTGEIPPQIGKCRNLRTLLVDGNILEGRIPSEIGGVVELRVLDVSRNSLTGRVPKELANCVKLSVLVLTDLFEDRDEGGLEDGFRGEFNAFVGSIPHEVLLLSSLRVLWAPRANLDGRLPSGWSDFCSLRVLNLAQNYVTGVVPERLGMCGNLSFLDLSSNNLVGYLPSLPCMMYFNVSRNNISGVLQGFRKESCRVSALDPSFLELDGFNDDAYFNIPGWRFQKNALIGLGFEETNTIVVSHDFSWNSFVGSLPLFSLGDNLFSATHKVSYALSLNNNKFNGTLPYQLVSNCDDLETLSVNLSVNQLSGGNSQASFLGCLKLTDFEAAYNQIDGSIGPGIGDLMMLQHLDLSGNKLSGSLPKQLGKLQNMKWMLLGGNNLTGEIPFQLGQLTSLAVLNLSHNALVGTIPVSLSNAKSLEILLLDHNNLSGEIPLTFSTLSNLVQLDVSFNNLSGHIPHLQHSSDCDSYKGNAHLHSCPDPYSDSPASLPVPLEIQHAHRQRKLRTLVIALGTSASVALCTLLGIVLVIFSGRSKFGRLSGIRRRQVVTFQDVPTELSYNSVVTATGNFSIRYLIGTGGFGSTYKAELSPGFLVAIKRLSIGRFQGIQQFETEIRTLGRIRHKNLVTLIGYYVGKAEMFLIYNYLSGGNLEAFIHDRSGKNVQWPVIYKIAKDIADALAYLHYSCVPRIVHRDIKPSNILLDEDLNAYLSDFGLARLLEVSETHATTDVAGTFGYVAPEYATTCRVSDKADVYSFGVVLLELMSGRKSLDPSFSEYGNGFNIVPWAELLMTEGRCSELFSSTLWEAGPKEKLLGILKLALTCTEETLSIRPSMKQVLEKLKQLKS 1055
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1837 1055 Gene3D Ribonuclease Inhibitor 483 696 IPR032675 -
Ssu4g1837 1055 Gene3D Ribonuclease Inhibitor 91 281 IPR032675 -
Ssu4g1837 1055 PRINTS Leucine-rich repeat signature 557 570 - -
Ssu4g1837 1055 PRINTS Leucine-rich repeat signature 602 615 - -
Ssu4g1837 1055 SUPERFAMILY L domain-like 302 672 - -
Ssu4g1837 1055 PANTHER RECEPTOR KINASE-LIKE PROTEIN XA21 12 1054 - -
Ssu4g1837 1055 ProSitePatterns Protein kinases ATP-binding region signature. 785 807 IPR017441 GO:0005524
Ssu4g1837 1055 ProSitePatterns Serine/Threonine protein kinases active-site signature. 899 911 IPR008271 GO:0004672|GO:0006468
Ssu4g1837 1055 Pfam Leucine rich repeat N-terminal domain 33 72 IPR013210 -
Ssu4g1837 1055 SUPERFAMILY RNI-like 87 395 - -
Ssu4g1837 1055 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE RPK2 12 1054 - -
Ssu4g1837 1055 CDD STKc_IRAK 785 1053 - -
Ssu4g1837 1055 Gene3D Phosphorylase Kinase; domain 1 743 854 - -
Ssu4g1837 1055 Pfam Leucine Rich Repeat 557 577 IPR001611 GO:0005515
Ssu4g1837 1055 Pfam Leucine Rich Repeat 200 222 IPR001611 GO:0005515
Ssu4g1837 1055 Pfam Protein kinase domain 784 980 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu4g1837 1055 Gene3D Transferase(Phosphotransferase) domain 1 855 1054 - -
Ssu4g1837 1055 SUPERFAMILY Protein kinase-like (PK-like) 757 1050 IPR011009 -
Ssu4g1837 1055 Gene3D Ribonuclease Inhibitor 295 481 IPR032675 -
Ssu4g1837 1055 Gene3D Ribonuclease Inhibitor 29 90 IPR032675 -
Ssu4g1837 1055 SMART serkin_6 779 1054 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu4g1837 1055 SMART LRR_typ_2 246 270 IPR003591 -
Ssu4g1837 1055 SMART LRR_typ_2 650 672 IPR003591 -
Ssu4g1837 1055 SMART LRR_typ_2 602 626 IPR003591 -
Ssu4g1837 1055 SMART LRR_typ_2 554 578 IPR003591 -
Ssu4g1837 1055 SMART LRR_typ_2 198 222 IPR003591 -
Ssu4g1837 1055 SMART LRR_typ_2 101 125 IPR003591 -
Ssu4g1837 1055 SMART LRR_typ_2 151 175 IPR003591 -
Ssu4g1837 1055 ProSiteProfiles Protein kinase domain profile. 779 1053 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1837 Ssu-Chr4 33489067 33492234 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g1837 10 1054 Receptor kinase-like Gene Family AT3G02130 43.745 0.0 795
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XV Ssu4g1837 Pkinase 4.2e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1837 - - gmx:100795047 1793.09
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g1837 4 33489067 33492234 Ssu4g1837 4 33489067 33492234 ECH