Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1835 ATGTCAAGTACTCTTGCAGCAATATTTGGAGGAGCTGCAGGAGCCGTGGCATTGGTAGGGATTGCTATAATACTTATATGGTTTTGTTTGTCTCGTCAGAGGAATGTTTCTAGGACTTCAGAGATGGGGTCGTCTGATCCTTCCCAAGTGGGAGGACTTGGTGCAATTGAGTTGCCTATACAAGATACTAGGCGTTTTGCAATGGAAGAGCTGTCTCTGGCCACAAAAAATTTCAGTGATAAGAATTTGATTGGAGAAGGGAAATTTGGGGAGGTTTACAAGGGTTTACTTCAAGATGGAATGCTCGTAGCCATTAAAAAACGCCGTGGACTTGCCAGTCAGGAATTTGTTGATGAGGTACGGTATCTCTCATCCATTCACCATCGGAATCTCGTCAATCTTTTAGGCTACTGCCAGGAGAACAATCTTCAGTTTCTTATTTATGAATATGTGCCTAATGGAAGCGTCTCCAGTCACTTGTATGGCGCTGGTCAACAATCGCGAGAGAAGCTAGAATTCAAGCACAGGCTTTCAATAGCTCAAGGTGCAGCTAAAGGTTTGGCTCATCTTCACTCTTTGAGTCCCCGTTTGGTGCATAAGGATTTCAAAACCGCTAATGTTCTTGTGGATGAAAACTTCATTGCTAAGGTGGCAGATGCTGGACTTCGCAATTTTTTGGGGAGAGTTGACATTGCAGGCTCCTCTTCTCAAGTGGAAACAGATGAAATATTCCTTGCATCAGAGGTGAGAGAGTTCAGACGATTTTCTGAAAAGAGTGACGTATACAGCTTTGGGGTATTTTTGCTGGAATTGTTAAGTGGGAAAGAAGCAACAGAATCACCATTTCTGGAATCTAATCAAAATCTGGTTGAATGGGTGCTAAGTAATCAAGACCGTGGCATGATGTCTTACATCATTGACCGGAGATTGGAGAGTAGTTTTACGGCTGAAGGCATGGAAGATTACATCATGCTCATAATTAGATGCTTAGATCCTTCAAGTGAAAGGCGACCTGCTATGAGCTCTGTGCAAATGGAACTTGATCGGATCCTAGAGAAGGAAATGAACTTGACAACAATCATGGGCGAAGGAACCCCAACTGTGATTCTTGGAAGTCATTTATTCAaatcaacaacataa 1140 0.4246 MSSTLAAIFGGAAGAVALVGIAIILIWFCLSRQRNVSRTSEMGSSDPSQVGGLGAIELPIQDTRRFAMEELSLATKNFSDKNLIGEGKFGEVYKGLLQDGMLVAIKKRRGLASQEFVDEVRYLSSIHHRNLVNLLGYCQENNLQFLIYEYVPNGSVSSHLYGAGQQSREKLEFKHRLSIAQGAAKGLAHLHSLSPRLVHKDFKTANVLVDENFIAKVADAGLRNFLGRVDIAGSSSQVETDEIFLASEVREFRRFSEKSDVYSFGVFLLELLSGKEATESPFLESNQNLVEWVLSNQDRGMMSYIIDRRLESSFTAEGMEDYIMLIIRCLDPSSERRPAMSSVQMELDRILEKEMNLTTIMGEGTPTVILGSHLFKSTT 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1835 379 Gene3D Transferase(Phosphotransferase) domain 1 151 364 - -
Ssu4g1835 379 ProSitePatterns Protein kinases ATP-binding region signature. 84 107 IPR017441 GO:0005524
Ssu4g1835 379 Pfam Protein tyrosine and serine/threonine kinase 82 347 IPR001245 GO:0004672|GO:0006468
Ssu4g1835 379 ProSiteProfiles Protein kinase domain profile. 78 351 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu4g1835 379 ProSitePatterns Serine/Threonine protein kinases active-site signature. 197 209 IPR008271 GO:0004672|GO:0006468
Ssu4g1835 379 Gene3D Phosphorylase Kinase; domain 1 54 150 - -
Ssu4g1835 379 PANTHER PROTEIN KINASE SUPERFAMILY PROTEIN 1 378 - -
Ssu4g1835 379 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 1 378 - -
Ssu4g1835 379 SUPERFAMILY Protein kinase-like (PK-like) 62 345 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1835 Ssu-Chr4 33455231 33457988 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g1835 64 352 Receptor kinase-like Gene Family AT1G30570 40.878 3.14e-62 212
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXa Ssu4g1835 PK_Tyr_Ser-Thr 1.3e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1835 - - gmx:100305436 671.389
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g1835 4 33455231 33457988 Ssu4g1835 4 33455231 33457988 ECH