Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1828 ATGGTTCTTCAAAATGATATTGATTTGCTAAATCCTCCGGCTGAGCTGGAGAAGAGGAAACACAAGCTCAAGCGTCTTGTGCAGTCACCAAATTCTTTCTTCATgGATGTTAAGTGCCAGGGTTGCTTCAACATAACCACCGTCTTTAGCCACTCTCAGACTGTTGTTGTATGCGGAAACTGCCAGACTGTCTTGTGCCAGCCGACAGGCGGTCGGGCAAGGCTAACTGAGGGATGCTCTTTTAGGAAGAAGGGAGACTGA 261 0.4751 MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRARLTEGCSFRKKGD 86
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1828 86 PANTHER 40S RIBOSOMAL PROTEIN S27-RELATED 2 85 - -
Ssu4g1828 86 PANTHER 40S RIBOSOMAL PROTEIN S27 2 85 IPR000592 GO:0003735|GO:0005840|GO:0006412
Ssu4g1828 86 Hamap 30S ribosomal protein S27e [rps27e]. 24 84 IPR000592 GO:0003735|GO:0005840|GO:0006412
Ssu4g1828 86 Pfam Ribosomal protein S27 30 84 IPR000592 GO:0003735|GO:0005840|GO:0006412
Ssu4g1828 86 Gene3D - 5 85 IPR023407 -
Ssu4g1828 86 SUPERFAMILY Zn-binding ribosomal proteins 30 84 IPR011332 GO:0006412
Ssu4g1828 86 ProSitePatterns Ribosomal protein S27e signature. 38 70 IPR000592 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1828 Ssu-Chr4 33330838 33331677 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g1828 1 86 Cytoplasmic Ribosomal Protein Gene Family AT3G61110 95.349 8.03e-60 175
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1828 K02978 - gmx:100499804 177.178
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g1828 4 33330838 33331677 Ssu9g0294 9 15078375 15079187 PCT