Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1823 ATGAGTTTCCAAGACATCCAAGGTGGGCCCAACCCTCCCTCTCGCCGGAACCAGTCGCCGTCGCAGGCCATCGCTGCCGGAATTTTCCAGATCAACACCGCCGTCGCTACTTTCCGGCGACTCGTGGATGCCGTTGGAACCGTTAAAGACACTCCCGAACACCGTCAGAAGCTGCACAATACGAGGCAGAGGATATTGCAGCTGGTGAAGGATACTTCCGCTAAGCTCAAATCCTTGACTGAATCTGATCGTGAAAATGCCAGTGCCAGTAAGAAAATTGAGGATGCTAAACTTGCAAGAGATTTCCAAACCACATTGCAAGAGTTCCAGAAAGTGCAACAGCTTGCTTCTGAGCGCGAATCAAGTTACACCCCTGCCGCCCCTTCTTTACCATCAAGCTCTGGCTCTGGTGAAGAATCGGTTGGGATAGAAGTGGAAAGGCAGCCTTTTATCAGAGGGCAAATGAGGCAAGAGATACTTTTATTGGATAATGAAATATCCTTCAACGAGGCCATGATTGAGGAAAGAGAACAGGGAATTAGAGATGTAGAAGAGCAAATTGGACAAGTAAATGAAATATTCAAGGACCTAGCTGTTCTGGTCCATGATCAGGGTGTTATTATTGATGACATTCAATCAAATATTGATGCTTCTGCTGGTGCAACAATCCAAGCTAGGGGCCAGCTAGTCAAGGCTTCCAAAAGTGTGAAATCCAGAACCTCATGGTGTTGGTGGGTGCTTGGAATTTTTGTGGTCGTGCTGGTCATCTTAATTATTGTACTCATTCTTTAG 792 0.4672 MSFQDIQGGPNPPSRRNQSPSQAIAAGIFQINTAVATFRRLVDAVGTVKDTPEHRQKLHNTRQRILQLVKDTSAKLKSLTESDRENASASKKIEDAKLARDFQTTLQEFQKVQQLASERESSYTPAAPSLPSSSGSGEESVGIEVERQPFIRGQMRQEILLLDNEISFNEAMIEEREQGIRDVEEQIGQVNEIFKDLAVLVHDQGVIIDDIQSNIDASAGATIQARGQLVKASKSVKSRTSWCWWVLGIFVVVLVILIIVLIL 263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1823 263 SUPERFAMILY t-snare proteins 19 221 IPR010989 GO:0016020|GO:0016192
Ssu4g1823 263 Pfam SNARE domain 207 258 IPR000727 -
Ssu4g1823 263 MobiDBLite consensus disorder prediction 1 20 - -
Ssu4g1823 263 Gene3D - 164 263 - -
Ssu4g1823 263 SMART SynN_4 8 121 IPR006011 GO:0016020
Ssu4g1823 263 MobiDBLite consensus disorder prediction 113 142 - -
Ssu4g1823 263 Pfam Syntaxin-like protein 24 123 IPR006011 GO:0016020
Ssu4g1823 263 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 170 232 IPR000727 -
Ssu4g1823 263 Gene3D - 13 128 - -
Ssu4g1823 263 CDD SNARE_Qa 173 231 - -
Ssu4g1823 263 PANTHER SYNTAXIN-22-LIKE 15 262 - -
Ssu4g1823 263 SMART tSNARE_6 165 232 IPR000727 -
Ssu4g1823 263 PANTHER SYNTAXIN 15 262 IPR045242 -
Ssu4g1823 263 MobiDBLite consensus disorder prediction 113 139 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1823 Ssu-Chr4 33128716 33131179 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g1823 1 250 SNARE and Associated Proteins AT5G46860 57.471 1.64e-95 280
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1823 - K08488 gsj:114389394 391.349
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g1823 4 33128716 33131179 Ssu4g1823 4 33128716 33131179 ECH