Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1809 ATGGCTGATGGTCATGAATCAGACAAGAACATTGAGATATGGAAGATCAAGAAATTGATCAAAGCATTGGAATCTGCAAGAGGTAATGGTACCAGCATGATTTCTCTGATAATGCCTCCACGTGATCAAATTTCTCGTGTCACTAAGATGTTGGGAGATGAATTTGGAACTGCTTCAAATATCAAAAGCAGGGTGAACCGGCAGTCAGTGTTGGCTGCTATTACTTCTGCTCAACAGAGGTTGAAACTGTATAATAAGGTTCCTCCAAATGGTTTGGTTCTTTATACTGGTACCATTGTCACTGAGGATGGCAAGGAAAAAAAGGTGACAATTGATTTTGAACCTTTCAAGCCTATCAATGCGTCACTTTACCTCTGTGATAACAAGTTTCACACAGAAGCTCTAAATGAACTTTTAGAATCTGATGACAAGTTTGGTTTTATTATTATGGATGGAAATGGCACCCTTTTTGGGACTTTAAGTGGAAATACTCGTGAGGTGCTTCATAAATTTAGTGTTGATCTACCGAAGAAACACGGTAGAGGAGGGCAGTCAGCTTTGCGTTTTGCTCGTCTTCGCATGGAAAAGCGGCACAACTATGTCAGGAAGACCGCTGAACTTGCTACTCAGTTTTTCATCAATCCTGCTACTAGTCAACCTAATGTTTCTGGACTTATACTTGCTGGTTCAGCTGACTTCAAGACCGAGCTGAGCCAGTCAGATATGTTCGATCCTCGTCTGCAAGCAAAAATATTGAATGTGGTTGATGTTTCCTATGGTGGGGAAAATGGCTTTAATCAAGCTATTGAGTTATCGGCGGAGATGTTATCAAATGTGAAGTTCATTCAAGAGAAACGCTTGAtaggaaaatattttgaagagatCAGTCAGGATACTGGGAAATACGTCTTTGGGGTTGATGACACATTGAAGGCTCTGGAGATGGGTGCTGTGGAAACACTAATTGTGTGGGAAAATTTGGATGTTAATAGATATGTGCTGAAAAATAGTTCTACTGGTGAGATCATCATAAAGCACTTGAACAAGGAACAAGAGGCTAATCAGAGCCACTTCAGAGATTCAGCCACGTCTGCGGAGTTAGAGGTTCAGGAGAAGATGCCCTTGCTTGAGTGGTTTGCCAATGAGTACAAAAAATTTGGATGCTCGCTGGAATTTGTGACCAACAAATCTCAAGAAGGATCACAATTTTGCAGAGGGTTTGGTGGTATTGGGGGTATCCTTCGCTACCAGCTTGACATCAGATCGTTTGATGAGTTATCTGATGATGGAGAAGTGTATGAGGATTCTGATTAA 1314 0.4072 MADGHESDKNIEIWKIKKLIKALESARGNGTSMISLIMPPRDQISRVTKMLGDEFGTASNIKSRVNRQSVLAAITSAQQRLKLYNKVPPNGLVLYTGTIVTEDGKEKKVTIDFEPFKPINASLYLCDNKFHTEALNELLESDDKFGFIIMDGNGTLFGTLSGNTREVLHKFSVDLPKKHGRGGQSALRFARLRMEKRHNYVRKTAELATQFFINPATSQPNVSGLILAGSADFKTELSQSDMFDPRLQAKILNVVDVSYGGENGFNQAIELSAEMLSNVKFIQEKRLIGKYFEEISQDTGKYVFGVDDTLKALEMGAVETLIVWENLDVNRYVLKNSSTGEIIIKHLNKEQEANQSHFRDSATSAELEVQEKMPLLEWFANEYKKFGCSLEFVTNKSQEGSQFCRGFGGIGGILRYQLDIRSFDELSDDGEVYEDSD 437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1809 437 TIGRFAM aRF1/eRF1: peptide chain release factor 1, archaeal and eukaryotic forms 12 417 IPR004403 GO:0003747|GO:0006415
Ssu4g1809 437 Pfam eRF1 domain 2 144 278 IPR005141 -
Ssu4g1809 437 Pfam eRF1 domain 1 18 138 IPR005140 -
Ssu4g1809 437 PANTHER PEPTIDE CHAIN RELEASE FACTOR SUBUNIT 1 1 437 IPR004403 GO:0003747|GO:0006415
Ssu4g1809 437 Gene3D - 279 437 IPR029064 -
Ssu4g1809 437 Pfam eRF1 domain 3 281 418 IPR005142 -
Ssu4g1809 437 PANTHER EUKARYOTIC PEPTIDE CHAIN RELEASE FACTOR SUBUNIT 1-3-LIKE 1 437 - -
Ssu4g1809 437 Gene3D eRF1 domain 1 2 135 IPR024049 -
Ssu4g1809 437 SUPERFAMILY N-terminal domain of eukaryotic peptide chain release factor subunit 1, ERF1 6 140 IPR024049 -
Ssu4g1809 437 Gene3D eRF1 domain 2 136 277 IPR042226 -
Ssu4g1809 437 SUPERFAMILY L30e-like 278 420 IPR029064 -
Ssu4g1809 437 SUPERFAMILY Translational machinery components 142 276 - -
Ssu4g1809 437 SMART eRF1_1_2 5 140 IPR005140 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1809 Ssu-Chr4 32910098 32911411 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g1809 1 437 Eukaryotic Initiation Factors Gene Family AT3G26618 91.304 0.0 833
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1809 K03265 - tcc:18601188 847.425
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g1809 4 32910098 32911411 Ssu9g0279 9 14464294 14467498 PCT