Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1803 ATGGCGGGTGGTCTCATAAAAGCCGCAATTGGAGACGCGGTGTTGACTTTCATGTGGGTGTTCTGCTCCTCCATGTTGGGAATAGCGTCGGGGGCCATAACCAAAGCACTCGACCTTCAAAACCTCACCTACAACGGGTTCCCTTACCCTTCGATTCTCGTCACCACTACCCTCGTTTTCGTCCTCGTTTTCCTTTTCACCGTCGTCGGCAATGCCATGGGTGGCGCCAGCTTCAACCCCACCGGCACCGCTTCCTTTTACGCCGTTGGTCTCGGCTCAGACACGCTCTTCTCAATGGCTCTTCGTTTCCCTGCCCAGGCGGTGGGTGCTGCGGGTGGTGCAATGGCAATTATGGAAGTGATTCCTGCGAAATACAGGCACATGATTGGGGGGCCTTCTTTGAAAGTGGACTTGCACACTGGGGCTATTGCTGAAGGGTTGTTGACTTTTTTGATTACCTTTGCCGTTCTCTTCATCATCCTCAAGGGCCCTCGTAGTAATTTATTGAAGACTTGGTTGATGGCCACAGCAACTGTAGCTTTGGTCATGGTTGGATCTGCCTACACTGGGCCAGCAATGAATCCTGCCAACGCCTTTGGTTGGGCATACTTAAACAACTGGCACAACACATGGGACCAATTCTATGTATACTGGATTTGCCCTTTCACTGGAGCAATATTGGCTGCTTGGCTGTTCCGTGCTATCTTTCCCCCACCTCCACCACTTGTAAAACAGAAGAAAGCATGA 747 0.5141 MAGGLIKAAIGDAVLTFMWVFCSSMLGIASGAITKALDLQNLTYNGFPYPSILVTTTLVFVLVFLFTVVGNAMGGASFNPTGTASFYAVGLGSDTLFSMALRFPAQAVGAAGGAMAIMEVIPAKYRHMIGGPSLKVDLHTGAIAEGLLTFLITFAVLFIILKGPRSNLLKTWLMATATVALVMVGSAYTGPAMNPANAFGWAYLNNWHNTWDQFYVYWICPFTGAILAAWLFRAIFPPPPPLVKQKKA 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1803 248 Gene3D Glycerol uptake facilitator protein. 3 242 IPR023271 -
Ssu4g1803 248 Pfam Major intrinsic protein 6 232 IPR000425 GO:0015267|GO:0016020|GO:0055085
Ssu4g1803 248 PANTHER AQUAPORIN SIP1-1 4 247 IPR044222 GO:0015250
Ssu4g1803 248 PRINTS Major intrinsic protein family signature 98 117 IPR000425 GO:0015267|GO:0016020|GO:0055085
Ssu4g1803 248 PRINTS Major intrinsic protein family signature 175 197 IPR000425 GO:0015267|GO:0016020|GO:0055085
Ssu4g1803 248 PRINTS Major intrinsic protein family signature 215 235 IPR000425 GO:0015267|GO:0016020|GO:0055085
Ssu4g1803 248 PRINTS Major intrinsic protein family signature 144 162 IPR000425 GO:0015267|GO:0016020|GO:0055085
Ssu4g1803 248 PRINTS Major intrinsic protein family signature 59 83 IPR000425 GO:0015267|GO:0016020|GO:0055085
Ssu4g1803 248 PRINTS Major intrinsic protein family signature 7 26 IPR000425 GO:0015267|GO:0016020|GO:0055085
Ssu4g1803 248 PANTHER AQUAPORIN SIP1-1 4 247 - -
Ssu4g1803 248 SUPERFAMILY Aquaporin-like 5 242 IPR023271 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1803 Ssu-Chr4 32625221 32630727 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g1803 4 236 Major Intrinsic Protein MIP AT3G04090 60.086 5.94e-85 251
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1803 K09875 - gmx:102669186 432.565