Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1802 ATGCTGAAGCGCCCCGGCCGCCAGGAGTCCCTCGCCGACAAGATCTACCGGTTCCGAGGGACGCTGCTCGTCGTCGCGATCCCGCTCGTCCTCATCACCTTCGTCCTCTACGTCATGCCGTCCAGCTCCTCCAACGAGTCCCTCGGAGACTACGCCCTCGTCAACCGGAAAATGTCCCCCAACAAGAAATCCGGCGGCTCCTACGCCGTTATCTTCGACGCCGGCAGCTCCGGCAGCCGCGTCCACGTCTTCCATTTCGATCACAGCCTAGATCTCGTTCCCATTGGCAAGGATCTCGAACTTTTCGTCCAgACTAAACCGGGTTTGAGTGCGTACGCTCAGAATCCGCAAAAGGCAGCGGAATCTTTGGTTTCGCTTTTGGATAAAGCGGAGAGTGTCGTTCCTCGTGAATTGCGATCCAAGACACCGGTTCGAGTTGGGGCGACTGCGGGTTTGAGGGCTTTGGAAGGGGATGCATCGGATAGGATCTTGCAAGCGGTAAGGGATTTGCTTAAGGGAAGGAGTAGCCTGAAATCTGAGACTGATGCAGTTACGGTGTTGGATGGAACACAAGAAGGTGCTTATCAATGGGTTACCATCAACTATCTATTGGGAAACTTGGGAAAAGATTATTCAAAGACTGTTGGGGTAGTTGATCTTGGAGGTGGATCTGTTCAAATGGCTTATGCCATCTCAGAGACAGACGCTGCTATGGCTCCAAAAGTAGCAGATGGAGGGGATCCATATGTCAAGGAGATGTTCCTGAGGGGAAGGAAATACTACCTCTATGTTCACAGTTACTTGCACTATGGTTTACTAGCTGCTCGTGCAGAGATTTTAAAGGTTTCTGATGATGCTGAAAACCCTTGTATCTTATCTGGCTATGATGgATCGTACAAATATGGAGGAAAGTCGTTTAAGGCTTCATCCTCCTCTTCTGGAGCAAGCTTAAACGAATGCAAAAGTGTTGCTCTTAAGGCTCTCAAAGTTAATGAGTCGACATGTACTCATATGAAGTGCACTTTTGGTGGGATATGGAATGGTGGAGGGGGAGATGGACAGAAGAACCTTTTTGTTGCCTCTTTTTTCTTTGACCGGGCTGCTgaggCTGGTTTTGCTGATCCAAACTTGCCAGTTGCGATAGTTCGTCCTGCAGATTTTGAGGATGCAGCTAAGCAAGCTTGTCAAACAAAACTTGAGAATGCCAAATCCACATATCCACATGTTGATGAGGGGAACCTTCCCTATCTTTGCATGGATCTTGTATACCAGTATACGCTGCTTGTTGATGGGTTTGGCATATATCCATGGCAAGAGATTACATTGGTGAAGAAAGTTAAATACGATGATGCCCTCGTTGAGGCAGCATGGCCCCTAGGCAGCGCCATTGAAGCTGTATCATCTACGTAA 1410 0.4865 MLKRPGRQESLADKIYRFRGTLLVVAIPLVLITFVLYVMPSSSSNESLGDYALVNRKMSPNKKSGGSYAVIFDAGSSGSRVHVFHFDHSLDLVPIGKDLELFVQTKPGLSAYAQNPQKAAESLVSLLDKAESVVPRELRSKTPVRVGATAGLRALEGDASDRILQAVRDLLKGRSSLKSETDAVTVLDGTQEGAYQWVTINYLLGNLGKDYSKTVGVVDLGGGSVQMAYAISETDAAMAPKVADGGDPYVKEMFLRGRKYYLYVHSYLHYGLLAARAEILKVSDDAENPCILSGYDGSYKYGGKSFKASSSSSGASLNECKSVALKALKVNESTCTHMKCTFGGIWNGGGGDGQKNLFVASFFFDRAAEAGFADPNLPVAIVRPADFEDAAKQACQTKLENAKSTYPHVDEGNLPYLCMDLVYQYTLLVDGFGIYPWQEITLVKKVKYDDALVEAAWPLGSAIEAVSST 469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1802 469 Pfam GDA1/CD39 (nucleoside phosphatase) family 66 468 IPR000407 GO:0016787
Ssu4g1802 469 PANTHER APYRASE-LIKE PROTEIN 1 469 - -
Ssu4g1802 469 Gene3D Exopolyphosphatase. Domain 2 188 447 - -
Ssu4g1802 469 PANTHER ADENOSINE/GUANOSINE DIPHOSPHATASE 1 469 IPR000407 GO:0016787
Ssu4g1802 469 Gene3D - 68 463 - -
Ssu4g1802 469 CDD NBD_sugar-kinase_HSP70_actin 70 229 - -
Ssu4g1802 469 ProSitePatterns GDA1/CD39 family of nucleoside phosphatases signature. 187 202 IPR000407 GO:0016787
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1802 Ssu-Chr4 32605877 32612575 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g1802 6 468 Calmodulin-binding Proteins AT3G04080 71.922 0.0 653
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1802 K14641 - gmx:100786073 842.802