Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1800 ATGGCTTATCTAACTCTCGTTCCTCTTTTTTTCTGGACGTTACTTGCAACTGCAAGTTCCTCCTCCCTGTATCTTGGGAAGGGCTTCACCCATCGTAAACTGTCCCCCAATTATCAAATTCAGAATTCTATCAACGAATCCTATGCAGTTATCTTCGACGCTGGTAGTACGGGAAGCCGTGTACATGTCTACCGTTTCAACCAGCAATTAGATCTCCTTCATATTGGCCAAGACCTTGAGCTGTTCGTCAAGACTAAGCCAGGTTTAAGTTCGTACGCTGAGAATCCACAACAAGCCGCAGAATCTCTTGTTCCACTTCTAGAGGAAGCAGAAGCTGCTGTTCCTGAGGAGTTGCACTTCAGGACACCCGTTAAAGTTGGAGCAACTGCAGGTTTAAGAGCATTGGAAGGGATGCTTCTGACAGGATCTTGCAGGCGGTAA 441 0.4649 MAYLTLVPLFFWTLLATASSSSLYLGKGFTHRKLSPNYQIQNSINESYAVIFDAGSTGSRVHVYRFNQQLDLLHIGQDLELFVKTKPGLSSYAENPQQAAESLVPLLEEAEAAVPEELHFRTPVKVGATAGLRALEGMLLTGSCRR 146
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1800 146 Gene3D - 48 136 - -
Ssu4g1800 146 PANTHER APYRASE-LIKE PROTEIN 9 137 - -
Ssu4g1800 146 Pfam GDA1/CD39 (nucleoside phosphatase) family 42 136 IPR000407 GO:0016787
Ssu4g1800 146 PANTHER ADENOSINE/GUANOSINE DIPHOSPHATASE 9 137 IPR000407 GO:0016787
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1800 Ssu-Chr4 32581817 32584295 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g1800 46 135 Calmodulin-binding Proteins AT3G04080 65.556 1.07e-34 124
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1800 K14641 - gmx:100787491 199.519