Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1798 ATGCTCTGGCCACGGTCTATGAGCATGTGCTTCCTATCCCTCATTACTGTTCTACTCTTCTCGTTGCCACCTTTCTCTTCTTCCCAGTATCTTGGGAACAACATACTCACTCATCGTAAGATCTTCCCCAAACATGAAGCCACTACCTCTTATGCCGTGATCTTTGATGCTGGTAGCACTGGGAGTCGTGTGCATATCACGCCCGGTTTGAGTGCATACGCAGATAATCCTAAACAAGCCGCCGAATCTTTGAGTCCACTTTTAGAGGAAGCTGAAAGTATTGTCCCTGAGGAACTGCACCCCAAGACACCACTTAAGCTTGGGGCAACAGCGGGTTTAAGGCTTTTGGATGGGGATGCTGCTGAAAATATATTGCAAGCGGTTAGGGATATGTTCAGGAACAGAAGTACCCTGAACGTTCAACCTGATGCAGTAGCTGTTATTGATGGAACCCAAGAAGGTTCTTATCTATGGGTGGCAGTTAACTATCTATTAGGAAAGTTGGGGAAGAAGTTTACAAAAACGGTGGGAGTAATTGATCTTGGAGGTGCATCAGTTCAAATGGCCTATGCCGTCTCAAGGAacacagctaaaaatgctccaAAAGCACCAGAAGGAGAGGATCCATACATGAAGAAGCTTGTACTCAAGGGAAAGAAATATGACCTTTATGTTCACAGTTACTTGCGCTATGGTAAAGAAGCAGCTCGTGCCGAGATTTTGAAGGTCACTGATGGTTCTGCTAATCCTTGCATTTTAGCTGGCTTTGATGGGATCTACACATATTCCGGAGCAGATTATAAGGCCTATGCGCCCACTTCCGGTTCCAACTTTGATGAATGCCGAGAGATAGTTCTTCAGGCTCTCAGAGTGAATGAGCCATGCCCCCATCAAAATTGCACATTTGGTGGGATATGGGATGGTGGAAGAGGAAGTGGACAGAAAAATCTTGTCGTTAGTTCATCTTTCTATTATTTGGCTACAGAGGTTGGTTTCACTGATCCAAAGAAACCCAATTCCAAATCCCATCCTGTGGATTGGGAAATTGCAGCTAAACAAGCTTGTAAAATAACATTCGAGGATGTCAAATCCACTTATCCAAATGTTCAGCAAGCGAAACTCCATATTTATGCATGGATCTTACATACCAGTATTCATTGCTCGTTGATGGATTTGGTAGGCCTAGATCCACAGCAAGCGATTACAGTGGCAGATGGAATTGAATATCAAGATGCTGTTGTGGCAACAGCATGGCCTCTAGGAACTGCCATAGAAGCCATATCATCTTTGCCTAAATTTGATcgattaatgtattttatttaa 1323 0.4293 MLWPRSMSMCFLSLITVLLFSLPPFSSSQYLGNNILTHRKIFPKHEATTSYAVIFDAGSTGSRVHITPGLSAYADNPKQAAESLSPLLEEAESIVPEELHPKTPLKLGATAGLRLLDGDAAENILQAVRDMFRNRSTLNVQPDAVAVIDGTQEGSYLWVAVNYLLGKLGKKFTKTVGVIDLGGASVQMAYAVSRNTAKNAPKAPEGEDPYMKKLVLKGKKYDLYVHSYLRYGKEAARAEILKVTDGSANPCILAGFDGIYTYSGADYKAYAPTSGSNFDECREIVLQALRVNEPCPHQNCTFGGIWDGGRGSGQKNLVVSSSFYYLATEVGFTDPKKPNSKSHPVDWEIAAKQACKITFEDVKSTYPNVQQAKLHIYAWILHTSIHCSLMDLVGLDPQQAITVADGIEYQDAVVATAWPLGTAIEAISSLPKFDRLMYFI 440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1798 440 Gene3D - 67 424 - -
Ssu4g1798 440 PANTHER NOD FACTOR-BINDING LECTIN-NUCLEOTIDE PHOSPHOHYDROLASE 66 440 - -
Ssu4g1798 440 PANTHER NOD FACTOR-BINDING LECTIN-NUCLEOTIDE PHOSPHOHYDROLASE 9 66 - -
Ssu4g1798 440 Gene3D Exopolyphosphatase. Domain 2 149 410 - -
Ssu4g1798 440 PANTHER ADENOSINE/GUANOSINE DIPHOSPHATASE 66 440 IPR000407 GO:0016787
Ssu4g1798 440 PANTHER ADENOSINE/GUANOSINE DIPHOSPHATASE 9 66 IPR000407 GO:0016787
Ssu4g1798 440 Pfam GDA1/CD39 (nucleoside phosphatase) family 67 431 IPR000407 GO:0016787
Ssu4g1798 440 ProSitePatterns GDA1/CD39 family of nucleoside phosphatases signature. 148 163 IPR000407 GO:0016787
Ssu4g1798 440 CDD NBD_sugar-kinase_HSP70_actin 53 190 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1798 Ssu-Chr4 32479649 32484712 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g1798 50 429 Calmodulin-binding Proteins AT3G04080 51.365 1.67e-132 388
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1798 K14641 - gmx:100781628 633.254