Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1797 ATGGGAAGCCCAGAGTCCAATTTGCCACCCGGTTTTAGGTTCCACCCAACCGATGAGGAGCTCATTCTTCACTACCTTAGTAAAAAGGTAGCATCCATACCCTTGCCGGTTTCCATCATTGCTGAGGTTGATATCTACAAGTTAGATCCATGGGACTTACCAGCTAAGGCAACGTTTGGGGAGAAAGAATGGTATTTTTTCAGTCCTAGAGACCGAAAGTACCCAAATGGTGCAAGGCCAAACAGGGCAGCTGCTTCAGGGTATTGGAAGGCCACTGGGACGGATAAGACCATAGTGGCATCATCgcaaggaggaggaggaggagccCAAGAGAGCATTGGCGTGAAGAAGGCTTTGGTGTTCTACAAAGGAAGACCCCCAAAGGGTGTCAAGACCAATTGGATCATGCATGAATATCGCCTTGTAGAGAACAACAAACCCATTAAGCTCAAAGACTCCTCCATGAGATTGGATGACTGGGTGCTGTGCCGGATTTACAAAAAGTCCAAACATGTTCTAACTTCAACAGAGGCGGCAATAGGGGTAGGTGAGGTATATCAAGCAGAGGAGCACCTATTCAAAGAGACCCTTTTGCCAATCTCAAAATCTCCAACTCCTCCTCCTCAGAACACATTGATATCTCAGAAATCTGTGTCCTTCTCCAACCTGCTGGATGCCATGGACTACTCTGTGCTGAGCAGTTTCTTATCTGAGAATCATTCCAACCCACCAGGGGTTGGATCAAGTGCAGGCTTCAACAGTGGGAGTTTGGATCAGCAATCCTCTCCAATCAACAACCCTGGCAATACTTACATGTTTCAGAAGAACCCCCAATTGAACCCTTCAGTCTCCAACTTGGAAAACATGAGGCCAAAGCGCCAACTTTCAAACTTAGATGAGGACACGTTGTACCCATCAAAGAAATACCTGAGTTCCTCTTGCAACTTCCCTAACATCAACGCCCAATACGAGAACCCACAATGGAACTACCTCATGAAGCAGTCTTTGATGAATCAGCGGTTACTGCTTGGTGAGGAGCCTCTAGATTTGCCTCCAGGTTTCAGGTTCCACCCTACTGATGAGGAGATAATCACTTCTTATCTCACTGAGAAGGTGAAGAATAGCAGTTTCAGTGCAATTGCTATTGGAGAGGCTGATTTGAACAAGTGTGAACCTTGGGATTTGCCAAAGAAAGCCAAGATAGGGGAGAAAGAGTGGTACTTCTTCTGCCAAAAGGATAGGAAGTATCCAACAGGCATGAGAACCAATAGAGCAACTGAATCTGGGTACTGGAAGGCCACGGGAAAAGACAAGGAAATTTACAAAGGGAAAGGAAACCTTGTTGGGATGAAGAAGACCCTTGTGTTCTATAGAGGGAGAGCACCAAAGGGGGAGAAGACCAATTGGGTCATGCATGAATTCCGGTTGGAAGGCAAATTCGCAAGTTACAACCTTCCTAAGGCAGCAAAGGATGAATGGGTTGTCTCAAGGGTTTTTCACAAGAACACAGATGTCAAAAAGACCTCAATTCCAGGCCTTTTGAGGATAAACTCTATTGGGGATGATCTTCTTGATTATTCTTCACTCCCTCCTCTCATGGATCCTCCTTATGGCAACACCAACACCAACAACAAACTTGCAGGCTATAGTGACCAAGACTTCAAGGGAGGAGGAACTATCCCACTTTCATCAACTAAATCACAATCAGAGGGCTATTATCTCCCAAGTTTCTCCATCAACAACCACCACCAGCTTCTGATCAAGCCAGAAGACCACCACAGAACCTATGAAATTCCCACAATTAACTACACTTCCAACCAAGCCAACGATCTCAGCAACAACATTAACCCAATGGGGAACAACACACTCTCACAGCCCTTAAACATGTTCTCTGATTACTATGTGCACCAAAACAGGATCAAAAGCTCCATCATGCCGAGTGTTGCAGGCTCGGGTTTtggcagcaacaacaacaaccatgatCAAGCTATCCTAAGAGCATTTGCAGCCAACAACAACGAGCACTTAGGTGGATTAATGGACAAACAGTGCAAGACGGAGCAGTTCTCTTCTAACCACTCACAAGACACAGGCTTAAGCAACGACAGAAACACTGACACATCCTCGGTGGTGTCGAAGCAAGACAACAACATGGGACGAAATAGGGCATTGTACGAGGATCTTGAGGGTCCCTCTTCAGTTGCACCTCTCTCAGATTTGGAATGCCTGCAGTGGGATGACTACTGA 2247 0.4499 MGSPESNLPPGFRFHPTDEELILHYLSKKVASIPLPVSIIAEVDIYKLDPWDLPAKATFGEKEWYFFSPRDRKYPNGARPNRAAASGYWKATGTDKTIVASSQGGGGGAQESIGVKKALVFYKGRPPKGVKTNWIMHEYRLVENNKPIKLKDSSMRLDDWVLCRIYKKSKHVLTSTEAAIGVGEVYQAEEHLFKETLLPISKSPTPPPQNTLISQKSVSFSNLLDAMDYSVLSSFLSENHSNPPGVGSSAGFNSGSLDQQSSPINNPGNTYMFQKNPQLNPSVSNLENMRPKRQLSNLDEDTLYPSKKYLSSSCNFPNINAQYENPQWNYLMKQSLMNQRLLLGEEPLDLPPGFRFHPTDEEIITSYLTEKVKNSSFSAIAIGEADLNKCEPWDLPKKAKIGEKEWYFFCQKDRKYPTGMRTNRATESGYWKATGKDKEIYKGKGNLVGMKKTLVFYRGRAPKGEKTNWVMHEFRLEGKFASYNLPKAAKDEWVVSRVFHKNTDVKKTSIPGLLRINSIGDDLLDYSSLPPLMDPPYGNTNTNNKLAGYSDQDFKGGGTIPLSSTKSQSEGYYLPSFSINNHHQLLIKPEDHHRTYEIPTINYTSNQANDLSNNINPMGNNTLSQPLNMFSDYYVHQNRIKSSIMPSVAGSGFGSNNNNHDQAILRAFAANNNEHLGGLMDKQCKTEQFSSNHSQDTGLSNDRNTDTSSVVSKQDNNMGRNRALYEDLEGPSSVAPLSDLECLQWDDY 748
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1797 748 SUPERFAMILY NAC domain 346 502 IPR036093 GO:0003677|GO:0006355
Ssu4g1797 748 MobiDBLite consensus disorder prediction 243 292 - -
Ssu4g1797 748 Pfam No apical meristem (NAM) protein 351 476 IPR003441 GO:0003677|GO:0006355
Ssu4g1797 748 Pfam No apical meristem (NAM) protein 9 141 IPR003441 GO:0003677|GO:0006355
Ssu4g1797 748 Gene3D NAC domain 359 506 IPR036093 GO:0003677|GO:0006355
Ssu4g1797 748 Gene3D NAC domain 17 173 IPR036093 GO:0003677|GO:0006355
Ssu4g1797 748 PANTHER NAC DOMAIN-CONTAINING PROTEIN 87 346 704 - -
Ssu4g1797 748 ProSiteProfiles NAC domain profile. 8 168 IPR003441 GO:0003677|GO:0006355
Ssu4g1797 748 ProSiteProfiles NAC domain profile. 350 501 IPR003441 GO:0003677|GO:0006355
Ssu4g1797 748 PANTHER NAC DOMAIN-CONTAINING PROTEIN 87 7 280 - -
Ssu4g1797 748 MobiDBLite consensus disorder prediction 686 720 - -
Ssu4g1797 748 MobiDBLite consensus disorder prediction 686 719 - -
Ssu4g1797 748 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 7 280 - -
Ssu4g1797 748 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 346 704 - -
Ssu4g1797 748 MobiDBLite consensus disorder prediction 243 300 - -
Ssu4g1797 748 SUPERFAMILY NAC domain 5 168 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1797 Ssu-Chr4 32372942 32439602 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g1797 344 537 NAC Transcription Factor Family AT5G18270 76.733 1.02e-106 327
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Ssu4g1797 NAM 9.4e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1797 - - aprc:113861501 706.442