Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1795 ATGATTTTACAGATAAACATTGTTCCCAAAGCAACCCTGAATGAACATAAAGACGATGACACAACACAAGAGTTACAAGAAACAGAAAAAGATGTTCCGGATCCTAACAAAATTTTGACTCCAGATGAATTAGAGAGAGGAAAGTTGCCTCCTGAGGAAATCTTATCCCTTCCAATGTTTAAGAACTATACAGCTGGAAATCCTGCTCCCGTGTTGTATATTAAGAATTTGGCAAAAGATGTGATTGCTGatgatttctattttatatttgGGTCCTTGTTTGGAAGTATTGAGGCTGCTAAGTCTGGTCTTCAAGTCAAACTGATGCAGGAAGGACGAATGAGGGGTCAAGCGTTTTTAACATTCCCCTCAATTGAGCTGGCTCATCATGCTCTGAATCTAGTGAATGGATATGTATTAAAAGGCAAGCCAATGATCATCCAGTTTGGTCGGAATCCCGCTGCTGTCAAGGGAACTTAA 480 0.3896 MILQINIVPKATLNEHKDDDTTQELQETEKDVPDPNKILTPDELERGKLPPEEILSLPMFKNYTAGNPAPVLYIKNLAKDVIADDFYFIFGSLFGSIEAAKSGLQVKLMQEGRMRGQAFLTFPSIELAHHALNLVNGYVLKGKPMIIQFGRNPAAVKGT 159
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1795 159 MobiDBLite consensus disorder prediction 15 38 - -
Ssu4g1795 159 SUPERFAMILY RNA-binding domain, RBD 47 154 IPR035979 GO:0003676
Ssu4g1795 159 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 70 152 IPR000504 GO:0003723
Ssu4g1795 159 CDD RRM2_RBM40_like 71 150 - -
Ssu4g1795 159 Gene3D - 65 158 IPR012677 -
Ssu4g1795 159 SMART rrm1_1 71 148 IPR000504 GO:0003723
Ssu4g1795 159 PANTHER UNCHARACTERIZED 2 157 IPR045164 -
Ssu4g1795 159 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 72 144 IPR000504 GO:0003723
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g1795 72 148 Eukaryotic Initiation Factors Gene Family AT3G16380 32.468 1.25e-06 45.4