Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1791 ATGAACATGGATATGTGCCAAAATGTATCAGTTTCCGGTGAGTGCCAACAAGAGCAGGTCCTTGCCCCTTCTTGCTCAAGCAGCCTTGATGATCTCTTCTCTGCTCAGAACACGGAAGTGGATGTTGAGTTGGAATGGCTTTCAGTGTTTGTTGAAGACTGCTTGTCAAGCCCCCCAAGCTGTGTCTTGGTACCTGCTGGGGTTCAGACTACTAGCACAAGGACCAACCCTTCAGGCACATTAAAGAGACCCCAACAAAATGAATCTCCTTTGCAAAATTTTTCTGTGCCTGGGAAGGCCAGGAGCAAAAGGAAAAGGCTTTCAGCCCCTAGAACCAAAGACCCTTTAAGCATCTGGTCACACCATTTGAACCCCCAAAATGAGGCCTTGAGTTCTGACCCCCCTCTACTCAAACAGGCTTATTGGTTGGCTGACAGTGAACTCATTGTGCCTAAGCCAAAGGATGAGCTAGAGGTGACCAAAGAGGATGGAGAAGGGGTGGAGAAGGGGATTATTGTGAGCAAGGAAAGCTTTGGGGACTCTCAGCTTGAGGTTAGCAATGGTCAACAACCAATGCCAAGGAGGTGCACCCATTGCCTGGCTCAGAGGACCCCACAGTGGAGGGCAGGACCATTGGGTCCAAAGACACTATGTAATGCATGTGGAGTGAGGTACAAGTCTGGTAGGTTGCTACCCGAGTATAGGCCAGCCAAAAGTCCTACTTTTGTAAGCTATTTGCACTCCAATTCCCACAAGAAAGTCATGGAGATGAGGATGGCTGTTTACTCTACCATTTCTAGTGAGCAGTAG 810 0.4864 MNMDMCQNVSVSGECQQEQVLAPSCSSSLDDLFSAQNTEVDVELEWLSVFVEDCLSSPPSCVLVPAGVQTTSTRTNPSGTLKRPQQNESPLQNFSVPGKARSKRKRLSAPRTKDPLSIWSHHLNPQNEALSSDPPLLKQAYWLADSELIVPKPKDELEVTKEDGEGVEKGIIVSKESFGDSQLEVSNGQQPMPRRCTHCLAQRTPQWRAGPLGPKTLCNACGVRYKSGRLLPEYRPAKSPTFVSYLHSNSHKKVMEMRMAVYSTISSEQ 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1791 269 SMART GATA_3 190 244 IPR000679 GO:0006355|GO:0043565
Ssu4g1791 269 MobiDBLite consensus disorder prediction 70 96 - -
Ssu4g1791 269 Pfam GATA zinc finger 196 230 IPR000679 GO:0006355|GO:0043565
Ssu4g1791 269 MobiDBLite consensus disorder prediction 70 119 - -
Ssu4g1791 269 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 191 254 - -
Ssu4g1791 269 CDD ZnF_GATA 195 242 IPR000679 GO:0006355|GO:0043565
Ssu4g1791 269 ProSiteProfiles GATA-type zinc finger domain profile. 190 226 IPR000679 GO:0006355|GO:0043565
Ssu4g1791 269 PANTHER GATA TRANSCRIPTION FACTOR 3 269 - -
Ssu4g1791 269 PANTHER GATA TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY PROTEIN 3 269 - -
Ssu4g1791 269 Gene3D - 185 258 IPR013088 GO:0006355|GO:0008270
Ssu4g1791 269 ProSitePatterns GATA-type zinc finger domain. 196 221 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1791 Ssu-Chr4 32196276 32197385 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g1791 42 258 C2C2-Gata Transcription Factor Family AT4G32890 41.071 3.00e-42 145
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Ssu4g1791 GATA 1.1e-14 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1791 - - gmx:100786479 465.692
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g1791 4 32196276 32197385 Ssu9g0253 9 13444507 13445697 PCT