Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1780 ATGCCAGAGTTGAGAAGTGGAGCTAGAAGGTCGAAACGGCTTGGAGATCTTCAGCCTGGTCCACTACCTGTTGATCAAGGAGAGAATTGGGCACAACCTGCTCAGAATCGAACTAGGAGGAGAGTTGGAGGTGGAAGAGGAAGAGGTGGTAATGCCACAGCTGTAGGCAAAGGGCCTTCACCAGCTGTACCCACAAGGCGAACTGCAGCTGGTAGAGGCCGCGGAGCAAGATTGATTGATCTGGACCCTGAACCTTGCGAAGTCTTGCCAGAACCTGTTGCTTTAGGGGCTCCAGAACCCGTTTACAACCAAGTAGAGGTAGTGGCCAATAATAATATTGCAATGGAGGGTGGAAGTGCAGATAAGGTGGCAGGAGCCGAAGAAGAAGCAAGCACAACCCCTGTGCCAGAGAGGGTACAAGTTGGTAACTCTCCTGTATATAAGATAGAAAGGAAATTGGGTAAGGGTGGTTTTGGTCAAGTTTATGTTGGCCGAAGGGTAAATGGTGGCTCTGACCGAACAGGTCCTGATGCGGTTGAGGTTGCACTTAAGTTTGAGCACAGAAACAGTAAAGGTTGCAATTATGGGCCTCCTTATGAGTGGCAAGTTTACAGTACTCTGAATGGCTGTTATGGCATTCCCTGGGTTCATTACAAAGGTCGGCAAggagatttctacattttgGTCATGGACATGCTTGGGCCCAGTCTTTGGGATGTATGGAATTCTCTTGGCCAATTAATGTCATCAACTATGGCTGCTTGCATTGCAGTGGAGGCAATATCAATTCTTGAGAAGCTTCACTTGAAAGGGTTTGTGCATGGAGATGTAAAACCTGAAAACTTTTTGCTTGGTCAACCTGGAACAGCTGACGATAAGAAGTTATATCTTATTGATCTTGGTCTGGCTTCTAGATGGAAGGATGCATCATCTGGTCAACATGTTGATTATGATCAGAGACCTGATATATTCAGGGGAACAATAAGGTATGCTAGTGTACATGCACATTTAGGTAGGACTGGAAGTCGAAGGGATGATCTTGAGTCACTGGCATACACTCTAATATTTCTCATAAAAGGGAGATTACCATGGCAGGGTTATCAGGGTGACAATAAAAGTTTTCTTGTTTGTAAGAAGAAGATGGCCACTTCTCCAGACTTGATGTGTTGCTTTTGTCCCGCTCCATTTAAGCAGTTTCTTGAAGCTGTTACTAATATGAGATTTGATGAGGAGCCAAATTATTCAAAGCTTATATCACTTTTTGAAAGCTTGATTGGACCATGCACTCCATTGAGACCTATTAGAATAGATGGAGCTTTAAAGGTTGGTCAAAAGCGGGGAAGAATGCTTATAAATCTGGAAGAAGATGAGCAACCCAAGAAGAAAGTGCGATTGGGGAGTCCTGCTACTCAGTGGATATCAGTGTATAATGCACGCCGTCCCATGAAGCAGAGATATCACTATAATGTTGCGGACACGAGGCTTCGTCAGCATGTAGACAAGGGTATTGAGGATGGGTTGTATATAAGCTGTGTGGCCTCTGCAGCAAATCTGTGGGCTCTAATCATGGATGCAGGCACTGGTTTTTCTTCGCAAGTTTATGAGTTATCACCGGCTTTCCTGCACAAGGATTGGATTATGGAGCAGTGGGAGAAAAATTACTATATCAGTTCAATAGCTGGCGCAGTTAATGGGAGTTCCTTGGTTGTCATGTCAAAAGGAACTCCTTACACACAGCAGTCCTACAAAGTGAGTGAATCATTTCCTTTCAAATGGATAAACAAGAAGTGGAAAGAAGGATTCCATGTTACCTCAATGACTACTGCTGGCAGTCGCTGGGGTGTTGTTATGTCCAGGAATGCTGGGTATTCTGATCAGGTTGTGGAGCTTGACTTTTTGTATCCAAGTGAAGGAATCCATCGTCGATGGGAGAATGGTTACCGGATTACTTCTATGGCTGCTACTAGTGATCAGGCAGCCTTCATACTGAGCATACCAAAACGCAAATTGCTTGATGAAACTCAGGAGACACTGCGTACATCTGCTTTCCCTAGCACCCATGTTAAGGAAAAATGGGCCAAGAATCTCTACATTGCCTCTATATGTTATGGGCGAACTGTTTGCTAG 2127 0.4443 MPELRSGARRSKRLGDLQPGPLPVDQGENWAQPAQNRTRRRVGGGRGRGGNATAVGKGPSPAVPTRRTAAGRGRGARLIDLDPEPCEVLPEPVALGAPEPVYNQVEVVANNNIAMEGGSADKVAGAEEEASTTPVPERVQVGNSPVYKIERKLGKGGFGQVYVGRRVNGGSDRTGPDAVEVALKFEHRNSKGCNYGPPYEWQVYSTLNGCYGIPWVHYKGRQGDFYILVMDMLGPSLWDVWNSLGQLMSSTMAACIAVEAISILEKLHLKGFVHGDVKPENFLLGQPGTADDKKLYLIDLGLASRWKDASSGQHVDYDQRPDIFRGTIRYASVHAHLGRTGSRRDDLESLAYTLIFLIKGRLPWQGYQGDNKSFLVCKKKMATSPDLMCCFCPAPFKQFLEAVTNMRFDEEPNYSKLISLFESLIGPCTPLRPIRIDGALKVGQKRGRMLINLEEDEQPKKKVRLGSPATQWISVYNARRPMKQRYHYNVADTRLRQHVDKGIEDGLYISCVASAANLWALIMDAGTGFSSQVYELSPAFLHKDWIMEQWEKNYYISSIAGAVNGSSLVVMSKGTPYTQQSYKVSESFPFKWINKKWKEGFHVTSMTTAGSRWGVVMSRNAGYSDQVVELDFLYPSEGIHRRWENGYRITSMAATSDQAAFILSIPKRKLLDETQETLRTSAFPSTHVKEKWAKNLYIASICYGRTVC 708
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1780 708 MobiDBLite consensus disorder prediction 1 72 - -
Ssu4g1780 708 SMART serkin_6 147 421 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu4g1780 708 CDD STKc_CK1 147 421 - -
Ssu4g1780 708 ProSitePatterns Protein kinases ATP-binding region signature. 153 184 IPR017441 GO:0005524
Ssu4g1780 708 SUPERFAMILY Protein kinase-like (PK-like) 147 433 IPR011009 -
Ssu4g1780 708 ProSiteProfiles Protein kinase domain profile. 147 425 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu4g1780 708 PANTHER CASEIN KINASE-RELATED 101 682 - -
Ssu4g1780 708 PANTHER OS01G0772600 PROTEIN 101 682 - -
Ssu4g1780 708 Gene3D Transferase(Phosphotransferase) domain 1 111 460 - -
Ssu4g1780 708 Pfam Protein kinase domain 147 379 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu4g1780 708 ProSitePatterns Serine/Threonine protein kinases active-site signature. 272 284 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1780 Ssu-Chr4 32020576 32026309 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g1780 121 307 EF-hand Containing Proteins AT5G66210 28.426 1.44e-08 55.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1-Pl Ssu4g1780 Pkinase 1.3e-15 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1780 - - gmx:100801967 1381.31
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g3261 1 84847017 84851982 Ssu4g1780 4 32020576 32026309 PCT