Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1769 aTGGAAATTCAATTCCAACAACCAACCCTGCAGAATCAGAAAGCAGGCATTGCAATCACCAAAGGAGGCAAGTTCAAAGGGAGAAGCAGAAACAACACCAACAAATTTGTTGGGGTGAGACAAAGGCCTTCAGGGAGATGGGTGGCTGAGATCAAAGACACAACTCAGAAGATAAGAATGTGGCTTGGCACATTTGAGACAGCTGAGGAAGCAGCCAGAGCCTATGATGAAGCTGCATGCCTTCTTCGTGGATCCAACACTCGCACCAACTTCATCACTCATGTCTCCTTGGATTCCCCTCTTGCTTCTCGAATTCGAAATCTGCTTAACAACAGAAAAGGTATAAAAAAACAGGAAGATGCTAATGCTAGTAATGCACCTGCCCCAAGGGTTAGCACCACTAGCAGTGCTAGTACTAGTACTAGTAGTAATTCAAGCAATGACAAAGACAACAATGACAAGTCTCTTTCTAATGTGACACCTCAAAGTTCAAATCTGTTTGATGATGCTTATAAACCAGATTTGAGCAATTGCAGGGAGGACTTTGAGTCTGGTCATCAATCCAATACTTCATGGGGTTTTGGACCTGTCTTTGATCGTTTTCCTATTACTCAAATATTGGACATACCAAAGATTGATGATGGCCTCACTCATACAGCTGACTTGGAGCTTTCAGAATTTGAAAGaatgaaagttgaaagacaaatATCAGCTTCACTCTATGCAATTAATGGGGTGCAAGAGTACATGGAAACTGTTCAGGACTCCAATGAAACTCTCTGGGATCTTCCACCCTTGTGCTCATTGTTCTGTTAA 816 0.4167 MEIQFQQPTLQNQKAGIAITKGGKFKGRSRNNTNKFVGVRQRPSGRWVAEIKDTTQKIRMWLGTFETAEEAARAYDEAACLLRGSNTRTNFITHVSLDSPLASRIRNLLNNRKGIKKQEDANASNAPAPRVSTTSSASTSTSSNSSNDKDNNDKSLSNVTPQSSNLFDDAYKPDLSNCREDFESGHQSNTSWGFGPVFDRFPITQILDIPKIDDGLTHTADLELSEFERMKVERQISASLYAINGVQEYMETVQDSNETLWDLPPLCSLFC 271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1769 271 Gene3D AP2/ERF domain 34 93 IPR036955 GO:0003700|GO:0006355
Ssu4g1769 271 MobiDBLite consensus disorder prediction 113 170 - -
Ssu4g1769 271 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERN2 15 258 - -
Ssu4g1769 271 Pfam AP2 domain 35 84 IPR001471 GO:0003700|GO:0006355
Ssu4g1769 271 SUPERFAMILY DNA-binding domain 35 92 IPR016177 GO:0003677
Ssu4g1769 271 CDD AP2 35 91 IPR001471 GO:0003700|GO:0006355
Ssu4g1769 271 MobiDBLite consensus disorder prediction 125 170 - -
Ssu4g1769 271 PRINTS Ethylene responsive element binding protein signature 36 47 IPR001471 GO:0003700|GO:0006355
Ssu4g1769 271 PRINTS Ethylene responsive element binding protein signature 58 74 IPR001471 GO:0003700|GO:0006355
Ssu4g1769 271 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 15 258 - -
Ssu4g1769 271 ProSiteProfiles AP2/ERF domain profile. 35 92 IPR001471 GO:0003700|GO:0006355
Ssu4g1769 271 SMART rav1_2 35 98 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1769 Ssu-Chr4 31819196 31820011 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g1769 24 271 AP2-EREBP Transcription Factor Family AT5G19790 43.191 7.40e-54 173
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Ssu4g1769 AP2 5.9e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1769 K09286 - gmx:100796898 459.144
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g1769 4 31819196 31820011 Ssu9g0225 9 12865187 12866147 PCT