Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1762 ATGGTGAGCGTTGAATCCTGTTACACCGTCTTACCCTCCGAACCCACCCCAAATGCAAAATTCTTCTCCTTGTGCGAACAAATCAAGCTTCGCACTCACGCACCTCTCCTTTACGCGTACAAGCCACACCCCGATCACAAAATATCAACCTTGGTTAACACCTTGAGGCACTCCCTTAGCCAAGCCCTGGCCATCTATTACCCACTTGCGGGCAGGTTGAGTTCGATCAAAGGGGGACAGTGGGAACTTCATTGCAACGCCAAGGGAGCACAAATCCTGGAAGCCATTTGCAAAGATGCGAATTTGGATGATCTGGGTGATTTTGTGCCTACCCACTTGGTGTCAAAACTCATACCCAACATTGACTACGATGTTCCCGTCGAGGACACGCCTCTGTTGGTTGCGCAACTAACAAGGTTCAGATGTGGCGGCGTCACAATTGGCGTGGCGTTTTGTCGCGCCGCAATTGATGGAACCGCAGCCATGCGGTTCATGACCACGTGGGCCAAGTTGGCTAGGAAGGAAAATTTGGACCACGAGGAAATGACGCCGTGTCACGATCGAAATATGTTGAATTCGTACAAGGTTCATTCGGGGGTGCACGATCATTCGGAGTTTCGCGCTCCTCCTCTTTGGTTAGGTCCACTGGGTAAAGAAACCAAGGTTGTGGTTGCAACGGTGAAACTCAGGGATGAACAAGTGAAGAAGCTCAAGCGCAAGGGGAATTACGTCAACATGAACACCACTAGCACTCCGCGACCTTATTCAACTTTTGAGGTCGTTGCGGGGTACTTGTGGAGGTGTGCGAGTAAAGCACGCTATGCGGGTAATGGTGACCAACCTACGAGGTTGTCCACTTTGGTTAATTGTAGGAACCGAGTGAGTCCACCCCTTCATGGGTATGCGGGAAACGCAGTGTTTCCCACCGTGACACCCACGTGCTCCTTTGGTGAAATCATGCATAGGCCTTTGAGCTATGCGGCTGGGAACGTTAGGGTGGCACTTGAAAGGGTCACGGGGGAGTTTGTGGGGTCGGCGCTTGATCACATTGCTAGACAGAAAGACATGAATTTGGTGAGGTACAATTTTCACTACCCTGCGCCAAGTGTGCATGAGGGACCCTACAAGGGGAACCCGAACCTTTTTGTTGTTAGTTGGATGAATTTCTCGTACAAGGATGCGGATTTTGGATGGGGGAAGCCTTTGTATTTTGGCCCCGGGTACATGGATTCCGAAGGGAAGGCGTTTGTTTTGAATAAGGCTAATGGGGATGGCCTTGTTGTGGCCATTTCTTTGGAGGCATCTCACATGGATgctttcaagaaatttttttacggTGATATCGAAGAGGAATTTCTTGTTTCCAAAATGTGA 1374 0.4934 MVSVESCYTVLPSEPTPNAKFFSLCEQIKLRTHAPLLYAYKPHPDHKISTLVNTLRHSLSQALAIYYPLAGRLSSIKGGQWELHCNAKGAQILEAICKDANLDDLGDFVPTHLVSKLIPNIDYDVPVEDTPLLVAQLTRFRCGGVTIGVAFCRAAIDGTAAMRFMTTWAKLARKENLDHEEMTPCHDRNMLNSYKVHSGVHDHSEFRAPPLWLGPLGKETKVVVATVKLRDEQVKKLKRKGNYVNMNTTSTPRPYSTFEVVAGYLWRCASKARYAGNGDQPTRLSTLVNCRNRVSPPLHGYAGNAVFPTVTPTCSFGEIMHRPLSYAAGNVRVALERVTGEFVGSALDHIARQKDMNLVRYNFHYPAPSVHEGPYKGNPNLFVVSWMNFSYKDADFGWGKPLYFGPGYMDSEGKAFVLNKANGDGLVVAISLEASHMDAFKKFFYGDIEEEFLVSKM 457
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1762 457 Pfam Transferase family 2 444 - -
Ssu4g1762 457 Gene3D - 217 446 IPR023213 -
Ssu4g1762 457 PANTHER TRICHOTHECENE 3-O-ACETYLTRANSFERASE 4 453 - -
Ssu4g1762 457 Gene3D - 1 208 IPR023213 -
Ssu4g1762 457 PANTHER SHIKIMATE O-HYDROXYCINNAMOYLTRANSFERASE-RELATED 4 453 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1762 Ssu-Chr4 31688673 31690046 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g1762 2 445 Monolignol Biosynthesis Gene Families AT5G48930 34.879 1.16e-76 244
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1762 K13065 - gmx:100775549 772.696