Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1759 ATGGACAGCCATAAACGCCTTCCCAAAACCATCGCACTGCTCTCCAACTTTCACAGTTATCGCCAGCAACAAAATCCCTACACAGTTCACCTTGAAGGAACAGACAGCCACAACGCTTTCCTAAAATCCCTATGCAAATCCTCTTCTAagtatagggataaaattgtccaTTCACCACGCCATCTTCCAccctctcctctcctctccctctGCGACCAAATCAAGCTCCCCAACCACGGATCCCAACTCTATCTCTACACCACCACCTCCATCGCCGACCCCTCATCCTTGATCCACACTCTCGCAAACTCCCTCAGCAAAGCCCTCACTCTCTACCACCCCTTCGCTGGTCGCCTGCGCCGGATCCACGGCGGCCGCTTCCAGCTCCTCTGCAACGCCAAGGGGGCACTCCTCGTGGAAGCCACGTGCGACCGCGAACTCGGTTTCGAAGACTTGTGTCGCTTCGCTCCCGCCCATGCGGTCCCCAAAATTGACTACGACGTCGTCCCAGTCGAGGATGTCCCCCTGCTGGTGGCGCAGGTGACACGGTTCCCGCGCGGTTACGTCACGCTCGGACTCGCCCTGTGTCGCGCCGTCCTCGACGGAACCTCGGTCACGAGCTTCGTTAACTCGTGGGCCAAACTCGCCAGAGAAAACGCCTTGGATCCTAGTTCGATTCCCCTGCTCGATCGAACTGTATTGGATTCACGAAAACTGAACAAACGACCGCGTTTTGCACACCCCGAGTTTCTGCCGCCACCCGTTTGGACTGAAAATAAACAACGTGGTACCCAGATCGAACAAGAGCTTGGTACGGCCATCTTGGGACTTACAAAAGGCCAAGTTCAGAAACTGAAGAGGAAAGCGTGTGACTTTGGAAGTGGGTATGCTCCCGCTCCCCTAAGACCTTATACTAGTTTTGAGGTTATAAGTGGTCACTTGTGGAGGTGTGTTTGCAAGGTGCGTTGTAAGGGAGATGTGGGCCTAGATCAACCAACAAGGTTGACCACGTTGGTGAATTGTAGAAACCGTTTGAGCCCGCCTCTCCCTAAGGTTTATTTTGGGAATGCAACGTTTCCTACGGTGACGCCAACTTGTTCCTTTGATGACATTATGCACAAGCCTCTGTGCTATGCGGTCGGGAAAGTGAGGGAAGCGATTGAGAGAATGGGTGATGAGTATGTGAGGTCTGCTCTTGACTATATAGCGAATGTGGAGGACATGAATTTGTTCAGGGACACGTTTTACAACTCTGGTGGGAAAGGGGGAGACCCTAGTTTATATGTGGTGGGTTGGACCAATTTTGCATACTATGAGACGGATTTTGGGTGGGGGAAACCGGCTTGTTTGCTTCCCGGGAACATTAATTCTGATGGTAAGGCTTTCCTTTTGGACACTGCAAGTGGTGATGGCTTCATTGTAGCTGTTTGTTTGCAGGCATCGCATATTGATGCGTTGAAGAAGTTGTTTTATGAGGAGGACATAGAGAATCCTACTTCcaaattgtga 1509 0.5003 MDSHKRLPKTIALLSNFHSYRQQQNPYTVHLEGTDSHNAFLKSLCKSSSKYRDKIVHSPRHLPPSPLLSLCDQIKLPNHGSQLYLYTTTSIADPSSLIHTLANSLSKALTLYHPFAGRLRRIHGGRFQLLCNAKGALLVEATCDRELGFEDLCRFAPAHAVPKIDYDVVPVEDVPLLVAQVTRFPRGYVTLGLALCRAVLDGTSVTSFVNSWAKLARENALDPSSIPLLDRTVLDSRKLNKRPRFAHPEFLPPPVWTENKQRGTQIEQELGTAILGLTKGQVQKLKRKACDFGSGYAPAPLRPYTSFEVISGHLWRCVCKVRCKGDVGLDQPTRLTTLVNCRNRLSPPLPKVYFGNATFPTVTPTCSFDDIMHKPLCYAVGKVREAIERMGDEYVRSALDYIANVEDMNLFRDTFYNSGGKGGDPSLYVVGWTNFAYYETDFGWGKPACLLPGNINSDGKAFLLDTASGDGFIVAVCLQASHIDALKKLFYEEDIENPTSKL 502
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1759 502 Pfam Transferase family 68 491 - -
Ssu4g1759 502 Gene3D - 256 492 IPR023213 -
Ssu4g1759 502 Gene3D - 52 252 IPR023213 -
Ssu4g1759 502 PANTHER SHIKIMATE O-HYDROXYCINNAMOYLTRANSFERASE-RELATED 65 493 - -
Ssu4g1759 502 PANTHER TRICHOTHECENE 3-O-ACETYLTRANSFERASE 65 493 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1759 Ssu-Chr4 31672343 31675096 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g1759 79 492 Monolignol Biosynthesis Gene Families AT5G48930 33.886 1.21e-68 224
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1759 K13065 - gmx:100819383 635.95