Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1752 ATGACGAACCAAAACCATGAATCTGGGATTGCCACTGCCATTGAGCTGGGATGTTCTTGCAGAGATGATTTGGCTTTTGTACACAGAGACTGTGCTGAGAATTGGTTCAGGACGAAGGGTAACAAGATTTGTGAAATCTGTGGATCCATTGCACGCAATGTACCTGATGTAGTTGAAGTCCAAACGACCGAACAGTTGAATGCAAATGATGATCTTAATGCCCCCATGCAACCACCAAATCCACCTTCCTGCCTGTCGGTGTCGGACTGGCTCGTGTTTTTCATTCTTGCCTGTATAGTCATTGCTTTGGTCATAGCCTGTCTTTTTCTATTCAAGGTGCTCAAATGA 348 0.4483 MTNQNHESGIATAIELGCSCRDDLAFVHRDCAENWFRTKGNKICEICGSIARNVPDVVEVQTTEQLNANDDLNAPMQPPNPPSCLSVSDWLVFFILACIVIALVIACLFLFKVLK 115
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1752 115 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 2 55 IPR013083 -
Ssu4g1752 115 SUPERFAMILY RING/U-box 15 50 - -
Ssu4g1752 115 Pfam RING-variant domain 13 47 IPR011016 GO:0008270
Ssu4g1752 115 PANTHER OS01G0850200 PROTEIN 4 113 - -
Ssu4g1752 115 SMART ringv_2 6 48 IPR011016 GO:0008270
Ssu4g1752 115 ProSiteProfiles Zinc finger RING-CH-type profile. 1 54 IPR011016 GO:0008270
Ssu4g1752 115 PANTHER ZINC FINGER, RING-CH-TYPE 4 113 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1752 Ssu-Chr4 31557975 31559256 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g1752 5 113 C3H Transcription Factor Family AT5G05830 50.000 6.79e-28 99.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1752 - - gmx:100818979 112.464