Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1723 ATGGCAGAAGAGGATCCAAAGCCTCTGAGCTACATCCCCGAGGTTATACTCAAGAAGCGTAAAAGCAGCGAAGCGCGGGCTTTGAGAAGAAAGGAACAGTTCCAGCGCAAGAACTTCCAATCCATCAAGAAGCCCGAGGATTTCGTCCTCGAGTATCGCAACAGGGAGGTGGACCTTATCAGAATGAAGCGGAGGGTGAAGAGGAAAGTGCCTCAACTTAACACCTCCAACACGTTGATAATCATTCGGATACAAGGGAAAAAGGACATGCATCCCAAGACGAGGAAGGTGTTGTACAGCTTGGGGTTGAGGAGAATGTTTAGTGCTGTGTTTGTGAAGCCGAGCGAGGGAGTAATGGCCAAACTGCAGAGAGTGGAACCGTATGTAACCTATGGATATCCAAATCTTAAAAGCATAAAGGAGCTAATTTACAAGAAAGGGCATGCGAGGATTGATAAGCGAAAAGTTCCCTTGACGGATAATAACATTATTGAGCAGGAATTAGGAAAGTTTGGTATTGTATGCATAGAAGACATGGTGCATCAGATTTATAATGTTGGTCCACACTTTAAGGAAGTTGTCAGATTTATGTGGCCCTTTGAGCTCAACAAGCCAGCTGAAGGATTGAAAGGATCAAAAACCCTATTCAAGGATGGTGGAGACACAGGAAACCGTGAGGATCTCATCAACGAACTaatcaataaaatgaattaa 714 0.4384 MAEEDPKPLSYIPEVILKKRKSSEARALRRKEQFQRKNFQSIKKPEDFVLEYRNREVDLIRMKRRVKRKVPQLNTSNTLIIIRIQGKKDMHPKTRKVLYSLGLRRMFSAVFVKPSEGVMAKLQRVEPYVTYGYPNLKSIKELIYKKGHARIDKRKVPLTDNNIIEQELGKFGIVCIEDMVHQIYNVGPHFKEVVRFMWPFELNKPAEGLKGSKTLFKDGGDTGNREDLINELINKMN 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1723 237 Gene3D - 79 237 IPR036919 -
Ssu4g1723 237 PANTHER 60S RIBOSOMAL PROTEIN L7 3 237 IPR039699 -
Ssu4g1723 237 PANTHER 60S RIBOSOMAL PROTEIN L7-1 3 237 - -
Ssu4g1723 237 TIGRFAM uL30_euk: 60S ribosomal protein uL30 17 237 IPR005998 GO:0000463|GO:0003735|GO:0022625
Ssu4g1723 237 SUPERFAMILY Ribosomal protein L30p/L7e 80 237 IPR036919 -
Ssu4g1723 237 CDD Ribosomal_L7_archeal_euk 79 237 IPR035808 -
Ssu4g1723 237 Pfam Ribosomal protein L30p/L7e 79 129 IPR016082 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1723 Ssu-Chr4 30572417 30574498 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g1723 1 237 Cytoplasmic Ribosomal Protein Gene Family AT1G80750 55.061 1.33e-87 258
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1723 K02937 - gmx:100500005 428.713