Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1719 ATGGCAGCCTTCATCTCCAAGTCCAAGCTTCAATCCAGAGTACTCACTCTTGTCCTCAActtatctttcttcttcctcttctgtCTCCTTCTAAAAGCCTATCTCCACCCTCCAAACTCAAATTCTCAAGCCAATTCCAATGTCCCCCTCACAATCTTCAACCATGCAAGATTGATCAGAGATATTAGTGTTGAAGGCTGCACTGACCTCCACAAGTACTCAGATTATGGCTCTAAGTGCTTGTATATCAAAAACCATCTTGACTGCAGGTCAAAAGGGTACATAAACTATCTACAAATCTTCTATTGTAACTTGGGAAAATTCCCAATTTTGGGACAAGCCCTCCTTGCCTTATGGCTTGTGGTGTTGTTCTATCTATTGGGTGACACAGCTTCCAACTACTTCTGCAACTCCTTGGAAGGTTTGTCCAACATCTTGAGGCTCTCCCCCACCATTGCAGGAGTAACCCTTCTTTCTCTGGGAAATGGGGCTCCTGATTTTTTCGCTAGTGTTGTGTCTTTCACAGGATCTTCCAGCAACGGTGCTATTGGACTCAATAGCATTCTTGGAGGGTCTTTCTTTGTGTCTTGTGCTGTCTTGGGGATCATAAGCATTCTGGTCAGCCAAAACCAGGTTGAAGTTGAAAAGGCCAGTTTCATTAGGGATgtccttttcttccttttctctcttctcatcCTCCTTATCATCATTTACATTGGTAAAATTACTTTGTTGGGTTCAATCTGCTATGTTTCTATCTACTTCCTCTATGTCTGTACTGTCTCTGCCACACATCTCATGTATGGAGGGGACAGAAATGAAAGGCAATACTCAGTTTCTTCTGATGAGTCACTAGAGTCTAGCATACCTTTGTTGGGCTATGTTGATGAAGAGAAACAAAGTTTGACAGAGATAGTGGTTGTTGAAGATAAGGAGGAAAAGCAAGAGTGTTTTGGTAATAATTcattgtttgattgtaattacTTGGGAAAGTTCCTACGAGTACTAGAATTACCTCTTAGCTTACCAAGAAGGCTTACCATACCAGTGGTGAGTAAGGAGAAGTGGTCAAAGCCATATGCAGTAATATCTGTCACATTAGCACCAGTTTTATTGGCAATTCTTTTTAACACTCAAAGTGAAAACTTGGGTTCAAAGAGCAGTCTAGTTACATACATAATAGCTACTTTGATTGGGATAGTTTTGGGCAACATGGCATGCGTGACAACAGATAAGTGTAGCCCACCAAGAAAGTCCTTGTTTCCTTGGCTGGTAGGGGGGTTTGCCATGAGTGTAACATGGACTTACATAATTGCTGAGGAGCTAGTTTCTCTCTTGGTTTCAATTGGGAGCATCATTGGGGTTAGCCCTTCAATCCTAGGACTAACTGTCCTAGCTTGGGGTAACTCACTTGGGGACTTGATAGCCAATGGTGCCATGGCTTTGAATGGTGGGTCAGATGGTGCCCAAATGGCCATATCTGGTTGTTTTGCTGGTCCTATGTTCAATACCTTGATGGGTTTGGGCTTGCCTCTTGTTCTCTCAGCTTGGTCGAGCATCCAGACCCTTATGTCATTCCTAAGGATCCTTCACTCTATGAGGCACTTTTGTTCATGA 1617 0.4113 MAAFISKSKLQSRVLTLVLNLSFFFLFCLLLKAYLHPPNSNSQANSNVPLTIFNHARLIRDISVEGCTDLHKYSDYGSKCLYIKNHLDCRSKGYINYLQIFYCNLGKFPILGQALLALWLVVLFYLLGDTASNYFCNSLEGLSNILRLSPTIAGVTLLSLGNGAPDFFASVVSFTGSSSNGAIGLNSILGGSFFVSCAVLGIISILVSQNQVEVEKASFIRDVLFFLFSLLILLIIIYIGKITLLGSICYVSIYFLYVCTVSATHLMYGGDRNERQYSVSSDESLESSIPLLGYVDEEKQSLTEIVVVEDKEEKQECFGNNSLFDCNYLGKFLRVLELPLSLPRRLTIPVVSKEKWSKPYAVISVTLAPVLLAILFNTQSENLGSKSSLVTYIIATLIGIVLGNMACVTTDKCSPPRKSLFPWLVGGFAMSVTWTYIIAEELVSLLVSIGSIIGVSPSILGLTVLAWGNSLGDLIANGAMALNGGSDGAQMAISGCFAGPMFNTLMGLGLPLVLSAWSSIQTLMSFLRILHSMRHFCS 538
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1719 538 PANTHER CATION/CALCIUM EXCHANGER 1 5 519 - -
Ssu4g1719 538 Pfam Sodium/calcium exchanger protein 117 260 IPR004837 GO:0016021|GO:0055085
Ssu4g1719 538 Pfam Sodium/calcium exchanger protein 424 517 IPR004837 GO:0016021|GO:0055085
Ssu4g1719 538 Gene3D - 360 536 IPR044880 -
Ssu4g1719 538 Gene3D - 148 281 IPR044880 -
Ssu4g1719 538 PANTHER NA+/CA2+ K+ INDEPENDENT EXCHANGER 5 519 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1719 Ssu-Chr4 30394348 30395964 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g1719 70 516 Antiporters AT5G17860 50.881 4.99e-145 426
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1719 K13754 - gmx:100811635 808.905