Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1718 ATGGCATCAAGACCCCTCGTTGAACAACAGGCCAGAGGTGAAGCAGTAGTTGGGGAAGGACAACAGCAGAAGAAAGGTGCAGCGGAGGGAAGGAACCGCAGAGCACTTGTTGATATTGGGAATTTGGTCAATGTAAGAGGAGTTGAGGTCAAGCCCAATCGCCCCATCACaagGTTATATATGATGGTTTTTGTTTTGGAATTGCAGAAACAGGATTGTGCTGATGTGGCCGGAGCTCCTCCTGTTGCTAATGCAGTTGCAGTCACTGTAAAACTAAAGCCTGAGGAGGTCATTGAAATTGAAGATAGCCCTGATAAGGAGGTCCAGAAAGACAAGAAAAAGGAGGGAGAAGCCAACTCCAAGAAGAAATCACACAGTCTTACTTCAGTGCTCACAGCTCGAAGCAAGGCAGCATGCGGCATAACTAACAAACCGAAGGAGCAGATTGTTGACATCGATGCTGGTGATGTGGACAATGAGCTTGCTGCTGTGGAGTACATTGATGACATTTACAAGTTTTACAAGCTTGTTGAGAACGAGAACCGCCCTCGTGACTATATAGACTCACAACCTGAGATAAATGAGAGGATGAGAGCTATACTGGTGGATTGGCTGATGGATGTCCACACCAAATTTGACCTTTCTCTTGAGACCCTTTACTTGACCATCAATATCATTGATCGGTTCCTAGAAGTTAAGACTGTTCCAAGGAGGGAACTGCAATTGGTAGGCATCGGTGCCATGCTGGTGGCATCCAAGTATGAAGAAATCTGGCCCCCTCagGTTAACGACTTTGTGTGCCTCTCAGATAGGGCTTACACCCATGAACAGATACTGGTCATGGAGAAAATCATACTGGGCAAGCTGGAATGGACTTTGACTGTGCCAACAACTTTTGTTTTCCTAGTTCGTTTTATCAAGGCATCAGTCCCAGATCAGGAGTTGGAAAACATGGCTCATTTTCTGTCTGAGTTGGGAATGATGCATTATGCCACCTTAATGTATTGCCCATCAGTGGTTGCTGCCTCAGCAGTCTTTGCAGCTAGATGCACTCTGAACAAAAGCCCCCTTTGGGGTGAGACACTTAAGCTGCACACGGGTTACTCACAAGAACAACTTATGGATTGTGCTAGGCTATTGGTGAGCTTCCACTCCACAGTTGGGAATGGAAAGCTTAAGGTGGTGTACAGAAAGTATTCTGATCCTCAGAAAGGAGCTGTTGCTGTGCTCCCACCGGCTAAAGATCTTCTGCCTGAAGGTTCTGCCTCCCAATAG 1275 0.4635 MASRPLVEQQARGEAVVGEGQQQKKGAAEGRNRRALVDIGNLVNVRGVEVKPNRPITRLYMMVFVLELQKQDCADVAGAPPVANAVAVTVKLKPEEVIEIEDSPDKEVQKDKKKEGEANSKKKSHSLTSVLTARSKAACGITNKPKEQIVDIDAGDVDNELAAVEYIDDIYKFYKLVENENRPRDYIDSQPEINERMRAILVDWLMDVHTKFDLSLETLYLTINIIDRFLEVKTVPRRELQLVGIGAMLVASKYEEIWPPQVNDFVCLSDRAYTHEQILVMEKIILGKLEWTLTVPTTFVFLVRFIKASVPDQELENMAHFLSELGMMHYATLMYCPSVVAASAVFAARCTLNKSPLWGETLKLHTGYSQEQLMDCARLLVSFHSTVGNGKLKVVYRKYSDPQKGAVAVLPPAKDLLPEGSASQ 424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1718 424 SUPERFAMILY Cyclin-like 158 293 IPR036915 -
Ssu4g1718 424 SMART Cyclin_C_2 296 413 IPR004367 -
Ssu4g1718 424 Gene3D - 183 294 - -
Ssu4g1718 424 PIRSF Cyclin_A_B_D_E 1 424 IPR039361 -
Ssu4g1718 424 ProSitePatterns Cyclins signature. 198 229 IPR006671 -
Ssu4g1718 424 Gene3D - 169 408 - -
Ssu4g1718 424 SUPERFAMILY Cyclin-like 295 414 IPR036915 -
Ssu4g1718 424 CDD CYCLIN 197 286 IPR013763 -
Ssu4g1718 424 PANTHER CYCLINS 24 418 IPR039361 -
Ssu4g1718 424 Pfam Cyclin, C-terminal domain 296 412 IPR004367 -
Ssu4g1718 424 PANTHER G2/MITOTIC-SPECIFIC CYCLIN S13-6 24 418 - -
Ssu4g1718 424 Pfam Cyclin, N-terminal domain 169 293 IPR006671 -
Ssu4g1718 424 MobiDBLite consensus disorder prediction 101 127 - -
Ssu4g1718 424 MobiDBLite consensus disorder prediction 101 122 - -
Ssu4g1718 424 CDD CYCLIN 294 381 IPR013763 -
Ssu4g1718 424 SMART cyclin_7 203 287 IPR013763 -
Ssu4g1718 424 SMART cyclin_7 300 382 IPR013763 -
Ssu4g1718 424 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1718 Ssu-Chr4 30357827 30360906 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g1718 1 417 Core Cell Cycle Gene Families AT4G37490 53.333 5.52e-144 415
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1718 K21777 - gmx:547919 655.595