Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1717 ATGTCCACCACCATGGTTTCTCTCTCCAAACGCATGGACTTCACTTTCAGATTCACCTTGTTCTTGAACACCTCTTTCCTattggttttgttttgtgtttctcTTATTGTTCCTTTGCACTCTTCAGAACATGTTGTTCTGAGGAGCAACCTCAGGGGTGAGCAAGATTGCCAGAGTTTCCACAGTTTGAGGGACTCCAAAGCCAAGTGCTTGTACTTGAAATCCAATGATCCATGTGTCTCTCAGGGCTATGTTGACTACCTTTACCTTTTCTATTGCAAATTTGGGGGGTTCCCTCTATTGGGTCACACCCTTTTGTTTCTTTGGCTTTTGGTTCTGTTCTATCTGTTGGCCAACACTGCCTCTGAGTACTTTTGTCCTTCTCTTGAGAACTTGTCCAAATTACTGAGGCTCTCTCCCACAATTGCTGGGGTGACTCTTCTCTCCCTTGGCAATGGTGCTAGTGATGTTTTTGCCACCCTTGTCTCATTCAGTGGCAGTGGGACCCGGGGCATTGGTTTTAACGCTGTGCTTGGGGCTGCTTCCTTTGTGTCCTGTGTCGTGGTTGGAATAGTGAGCATTTCAATTCGGCATAGGGGGGTTCGGGTTAAGAAGTGGGCCTTGGTGAGAGATgtttgttttcttctcttggTTCTTCTGTGCTTGTTCACCATTTTGATTGCCGGTGAGATCAATGTTCCTGGGGCAATAGGGTTTTGCTTGATGTATGTGCTGTATGTGGTTGTTGTTTGTGTCTCATCTACCCGAGGAAAAGGTTTGTGCGGAGATGCTGAAAGTGATGGTGATTTGAgtcatggtggtggtaatgATTTAGGTGTCCCTTTGCTCTGTGAGATGGAGAAAGGACTTGTTGATTGTGCTGCTGCAAATGGAGCTCGGGAAAGTGACATAAAAGTTGTGAGGAAATGTTGCTGTATGCAATCTTCAATTTGTAGAATGTTACTTTTTGTTTTGGAGATGCCACTTTACTTGCCTAGGAGGCTTACAATTCCTGTTGTTTGTGAAGAGAGATGGTCCAAACTTTATGCAGTTTGTTCAGCTTTCCTAGCACCACTTCTTTTGTCTTCCTTGTGGGTACCGGATAAGGAAAACAGCTTCAACTCAAGCCTTATTGTTTATGGGATTGGATTGTTGGTTGGGATTATATTAGGGGTAACTGCATTTTTCACAACTAATGTGTCAAGCCCTCCAAGGAAGTACCTATTTCTTTGGCTTGCAGGAGGGTTTGTGATGAGTGTGATTTGGAGCTACATTTCCGCTCAGGAATTGGTGGGGTTGTTGGTTTCACTTGGTTACATATGTGGAGTTAGTCCTTCAATTCTGGGGCTAACAGTCCTTGCCTGGGGGAATTCACTTGGGGATTTGGTGACAAATTTGACAATGGCTTTGAATGGTGGATCAGAAGGTGCTCAAATAGCAATATCAGGCTGTTATGCTGGCCCTATCTTCAATATAGTGATTGGATTGGGCTTATCTCTTGTGAGCTCTGCTTGGTCTGAGTACCCTTTGTCTGTTGTGCTCCCTAGAGATCCATATCTATGGGAGACATTGGCACTTTTGgcggttggattggtttgggCACTTCTGGTTTTGATTAGAAGAGATATGAAGCTTGATGCTCTATTGGGAGGAGGGCTTTTAGTTATTTACTTCATTTCTCTGATTCTGAGGCTGATTCAGACACTTGGGTCTTTCCAATTTCAGGATATGTTAGTCTCATTCTTCAAAAGATGA 1755 0.4211 MSTTMVSLSKRMDFTFRFTLFLNTSFLLVLFCVSLIVPLHSSEHVVLRSNLRGEQDCQSFHSLRDSKAKCLYLKSNDPCVSQGYVDYLYLFYCKFGGFPLLGHTLLFLWLLVLFYLLANTASEYFCPSLENLSKLLRLSPTIAGVTLLSLGNGASDVFATLVSFSGSGTRGIGFNAVLGAASFVSCVVVGIVSISIRHRGVRVKKWALVRDVCFLLLVLLCLFTILIAGEINVPGAIGFCLMYVLYVVVVCVSSTRGKGLCGDAESDGDLSHGGGNDLGVPLLCEMEKGLVDCAAANGARESDIKVVRKCCCMQSSICRMLLFVLEMPLYLPRRLTIPVVCEERWSKLYAVCSAFLAPLLLSSLWVPDKENSFNSSLIVYGIGLLVGIILGVTAFFTTNVSSPPRKYLFLWLAGGFVMSVIWSYISAQELVGLLVSLGYICGVSPSILGLTVLAWGNSLGDLVTNLTMALNGGSEGAQIAISGCYAGPIFNIVIGLGLSLVSSAWSEYPLSVVLPRDPYLWETLALLAVGLVWALLVLIRRDMKLDALLGGGLLVIYFISLILRLIQTLGSFQFQDMLVSFFKR 584
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1717 584 PANTHER NA+/CA2+ K+ INDEPENDENT EXCHANGER 6 573 - -
Ssu4g1717 584 Pfam Sodium/calcium exchanger protein 107 250 IPR004837 GO:0016021|GO:0055085
Ssu4g1717 584 Pfam Sodium/calcium exchanger protein 412 564 IPR004837 GO:0016021|GO:0055085
Ssu4g1717 584 PANTHER CATION CALCIUM EXCHANGER 6 573 - -
Ssu4g1717 584 Gene3D - 349 566 IPR044880 -
Ssu4g1717 584 Gene3D - 138 262 IPR044880 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1717 Ssu-Chr4 30343259 30345013 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g1717 12 571 Antiporters AT5G17850 53.054 1.91e-167 486
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1717 K13754 - gmx:100787016 862.062