Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1713 ATGCGCAAAAACGAGGGAGAAAGAGACTCAGACGTGCGTTTTGGAGTAGCCAAGGTCGCACTCACCAGGCGGGACGGGAAGgtCGCGCGCCCTTCCCTCTCTCACTCTCTCGATCTTGTCTATCTCTCCCAGCTTTTCATTCCCTTCACAATCCTCTCTCCGTCTTTCGTGAGTCCCTTCTCTCTTCTCACCTCTGTTGCCTTTCACGTGTTTTCTTCGGTTGCGTTCGAATTGCAGAGCGCAACCGGAAACCACCGCTCGCGCCACCACCGGAATAGTCCCCGCCACCGGTCTGCCACCGTCAGATTTGTATCAACCACAATGGTGTACTGCAGTCATTGTGCCAAAAATGTTGCTGGCGAGCGACTAGATGATGGTTACTTaTGTTGTGGAAGCTGTGGGAGGGTGCTGGAAGATTACTTTTTTGCTGACGAGCCTACATTTGTTAAGAATGCAGCAGGGCAGAGTAAATTATCAGGCAATTATGTAAGAACAGTTCAAAGCGAGTTCTCTGATTCACGTCAAAGGACTTTAGATAGAGCTTatgatgaaattaaatatttaagtttcGGCCTTGGAGTGACTGATGAAAGTATGGCTGGCCAAGCGTTGACCTTTTATAAAATAGCGCTTGAGCGAAATTTCACCCGTGGACGTAAATCAGAGCAAGTACAAGCTGCTTGTCTCTATATTGCATTCCGGCACAACAATAAGCCATACCTTCttattgatttttcaaattatttaaagacAGATGTTTATGTGCTAGGAGCAGTTTTCTTGCAGCTTTGTCAAGTGTTAAGGCTTGGAGAGCACCCAATTGTTCAAAAGCCTGTTGATCCTAGTCTTTTTATTCATAGATATACTAACAATTTGTTAAAGCCTAGGAGTAAGGCTGTCTCTGATACTGCGCCGACCATTGTTGGGAGTAAGGCTATCTCTGATACTGCGCTGACCATTGTTGCAAGCATGAAACGTGACTGGATGCAgACAGGGAGGAAACCTAGTGGATTATGCGGTGCAGCATTATACATATCTGCTCTTGCACATGGTTTTAAGTGCTCTAAGCCGGATATTCTTCGAATTGTCCATGTATGTGAAGCAACATTGACCAAACGACTGGTAGAATTTGAGAATACGGAGTCTTCTTGCTTGACAATTGAGGAGTTGAATATGATGGCAAAAGAGCATGAAAAAAATCCAACGGTAATGCCAAAAGGTGAATTAAAAGGATGTACTTCAAAAGATCTACTGTGTGAGCACAAGGATAGTGGGGTGCCCCATTTTGCACTTGGATTATGTGAAGCATGCTATAAGGATTTTGATAAGCTTTCTGGAGGACTTGGTGGTGGTTTGGATCCTCCTGCATTCCAGCGTGCTGAGAGGGAAAGAGTGAAAAAAACCCTTCCCGAGGAGAGTGTCAATGAAGCATGTTCTTTGGCAAACGCATCAAATGATCGATTTAAGGGCCACAAAGAAGATTTGCCAGCCTATATGCCAGAAAGTATAGGGGCTAATGTTGAGGATGAGGCCACTAAAGATGGTAAATATGATGATTCACATAGAGAAGATGAATCAGAAACTTTCTCTGATATTGATGATCAAGATGTTGATGTGTACCTTAATGATGAGGAGGGGAAGCGTATCAAGAAGATGCTATGGGAAAGAGCAAACCGAGAGTACCTTGAGGAGCAGGCAGCGAAGgaagcagcagcagcagctAATAAGAAAGCTTTTGaggcaaattttgaaaactgttCAGAGGATTTACTAGCAGCAAGAAAGTTTGCTGCTTCTGCTGTTGAAGCTGCGAAAAAATCCAGAAAGGAAATGAAACAGAAACGAGCCCTTGAGGCAAAAAATTCAGGGCCAGCTCAATCTGCTGCAGAGGCCTTTGGCCAATTGTCTAATAAAAAAAGGCATTTGCAGAGTCTCAAATCTAAAGTCAATTTTGATCGCCTGGGtgaattatttaatgaactGGAAGATGCCGGTGATCCCAAGAAACAGAATAAAGTACGATTTGATAATCATGACAATTTACAGTCCAAGGTTGAGGACAAAAATGATGATGAGATGGGACCAGCGgatgaatttgaatatgaaggTGATATGGGGGAGATGTATCAAAATACGTTGTCTACTGAAAATATGGATGATCAATATTTGCCTGAGGATGGTGGTTTCGGCTATAATGATTATGATGATTACTGA 2214 0.4151 MRKNEGERDSDVRFGVAKVALTRRDGKVARPSLSHSLDLVYLSQLFIPFTILSPSFVSPFSLLTSVAFHVFSSVAFELQSATGNHRSRHHRNSPRHRSATVRFVSTTMVYCSHCAKNVAGERLDDGYLCCGSCGRVLEDYFFADEPTFVKNAAGQSKLSGNYVRTVQSEFSDSRQRTLDRAYDEIKYLSFGLGVTDESMAGQALTFYKIALERNFTRGRKSEQVQAACLYIAFRHNNKPYLLIDFSNYLKTDVYVLGAVFLQLCQVLRLGEHPIVQKPVDPSLFIHRYTNNLLKPRSKAVSDTAPTIVGSKAISDTALTIVASMKRDWMQTGRKPSGLCGAALYISALAHGFKCSKPDILRIVHVCEATLTKRLVEFENTESSCLTIEELNMMAKEHEKNPTVMPKGELKGCTSKDLLCEHKDSGVPHFALGLCEACYKDFDKLSGGLGGGLDPPAFQRAERERVKKTLPEESVNEACSLANASNDRFKGHKEDLPAYMPESIGANVEDEATKDGKYDDSHREDESETFSDIDDQDVDVYLNDEEGKRIKKMLWERANREYLEEQAAKEAAAAANKKAFEANFENCSEDLLAARKFAASAVEAAKKSRKEMKQKRALEAKNSGPAQSAAEAFGQLSNKKRHLQSLKSKVNFDRLGELFNELEDAGDPKKQNKVRFDNHDNLQSKVEDKNDDEMGPADEFEYEGDMGEMYQNTLSTENMDDQYLPEDGGFGYNDYDDY 737
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1713 737 MobiDBLite consensus disorder prediction 502 535 - -
Ssu4g1713 737 CDD CYCLIN 316 368 IPR013763 -
Ssu4g1713 737 PANTHER TRANSCRIPTION FACTOR IIIB 90 KDA SUBUNIT 108 662 IPR029529 GO:0000126|GO:0000995|GO:0006383
Ssu4g1713 737 SUPERFAMILY Cyclin-like 279 380 IPR036915 -
Ssu4g1713 737 Gene3D - 170 271 - -
Ssu4g1713 737 Gene3D - 280 383 - -
Ssu4g1713 737 SUPERFAMILY Cyclin-like 181 269 IPR036915 -
Ssu4g1713 737 MobiDBLite consensus disorder prediction 715 737 - -
Ssu4g1713 737 Gene3D Single helix bin 523 572 - -
Ssu4g1713 737 MobiDBLite consensus disorder prediction 662 701 - -
Ssu4g1713 737 Pfam Brf1-like TBP-binding domain 530 659 IPR011665 -
Ssu4g1713 737 CDD CYCLIN 181 248 IPR013763 -
Ssu4g1713 737 MobiDBLite consensus disorder prediction 662 691 - -
Ssu4g1713 737 Pfam Transcription factor TFIIB repeat 175 263 IPR013150 GO:0017025
Ssu4g1713 737 Pfam Transcription factor TFIIB repeat 310 379 IPR013150 GO:0017025
Ssu4g1713 737 SUPERFAMILY Zinc beta-ribbon 103 150 - -
Ssu4g1713 737 PANTHER TRANSCRIPTION INITIATION FACTOR IIB-RELATED 108 662 IPR000812 GO:0006352|GO:0070897
Ssu4g1713 737 MobiDBLite consensus disorder prediction 507 528 - -
Ssu4g1713 737 PRINTS Transcription initiation factor IIB signature 123 143 IPR000812 GO:0006352|GO:0070897
Ssu4g1713 737 PRINTS Transcription initiation factor IIB signature 226 245 IPR000812 GO:0006352|GO:0070897
Ssu4g1713 737 PRINTS Transcription initiation factor IIB signature 333 349 IPR000812 GO:0006352|GO:0070897
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1713 Ssu-Chr4 30241962 30288721 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g1713 108 645 Inorganic Solute Cotransporters AT2G01280 40.909 4.66e-106 331
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1713 K15196 - gmx:100817609 1002.28