Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1706 ATGGAAGATCAAGGGCAGCAGCAGGAGGCAAAGGGTCCAAGGCATGGCCCCGAGAAGAGTGAAGCGGTTCGGTCAAGGTGGACTCCCAAGCCGGAACAAATCCTCATACTGGAGTCCATCTTCAACAGTGGCATGGTGAACCCCCCGAAGGACGAAACTGTCAGAATAAGAAAGCTTCTTGAGAAATTCGGCGCCGTCGGCGACGCCAACGTCTTCTACTGGTTCCAGAACCGCCGGTCGAGATCCCGCCGCCGCCAGCGCCAGATGATGCAGCAAGCCGCCGCCACCGTTAACCACCCTCAACCCCCAGCCTCAGCCTCAGCTTCTCGTTGGGGGTGCAATTCCACATGA 351 0.584 MEDQGQQQEAKGPRHGPEKSEAVRSRWTPKPEQILILESIFNSGMVNPPKDETVRIRKLLEKFGAVGDANVFYWFQNRRSRSRRRQRQMMQQAAATVNHPQPPASASASRWGCNST 116
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1706 116 MobiDBLite consensus disorder prediction 87 116 - -
Ssu4g1706 116 ProSiteProfiles 'Homeobox' domain profile. 20 85 IPR001356 GO:0003677
Ssu4g1706 116 Gene3D - 24 91 - -
Ssu4g1706 116 MobiDBLite consensus disorder prediction 78 116 - -
Ssu4g1706 116 MobiDBLite consensus disorder prediction 1 26 - -
Ssu4g1706 116 SUPERFAMILY Homeodomain-like 17 92 IPR009057 -
Ssu4g1706 116 SMART HOX_1 22 89 IPR001356 GO:0003677
Ssu4g1706 116 Pfam Homeodomain 24 84 IPR001356 GO:0003677
Ssu4g1706 116 PANTHER WUSCHEL-RELATED HOMEOBOX 11 1 100 IPR044558 GO:0003700|GO:0048830
Ssu4g1706 116 PANTHER WUSCHEL-RELATED HOMEOBOX 11 1 100 - -
Ssu4g1706 116 MobiDBLite consensus disorder prediction 1 28 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1706 Ssu-Chr4 30051308 30051658 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g1706 11 90 Wox Gene Family AT5G17810 79.268 2.41e-36 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Ssu4g1706 Homeodomain 1.8e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1706 - - gmx:100791266 167.933
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g1706 4 30051308 30051658 Ssu9g0393 9 19675078 19677450 PCT