Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1704 ATGAGTTCTTCACATCACTTCAATGTTGGTGAAAGCTTCAGTGGGGATATGagtttctttccttcttctctttttgtgGGTTCACAAACTCCTCCTTTGTCTATGGGTCATGGAAATGGGGTAGAGGGTCCAAAGTCTGATATGGGTCTTCAGATTTTGGGCCCCTCAATGTTTCAACCCCAGGAGAGCAGGGGGACAAAGAGGATCACCGATGAAATGGTTGAGAACAAGAACTTGTGTTTGAAACTTGGAGATGAAGTAGAAGTTAAGAGCCCTGCTTCAGGGAAAAATGGGTACACCAAGCTTTGTGCTAGAGGTCATTGGAGGCCTGCTGAAGATGAAAAACTCAAGGAACTTGTGGCTCAATATGGCCCTCAAAATTGGAACTTGATTGCTGAGCATCTGGAAGGAAGATCAGGAAAAAGTTGTAGATTGAGATGGTTTAATCAGCTAGATCCTAGGATCAACAGAAAGTCTTTTTCTGAGGAAGAAGAGGAGAGGCTTTTGACTGCTCATAAATTGTATGGTAACAAATGGGCTCTGATTGCTAGACTGTTTCCTGGAAGGACAGATAATGCAGTGAAGAACCATTGGCATGTGATCATGGCTAGGAGGCAGAGGGAGCAGTCTAGTAATGTGTATAGAAGGAGAAAACCCACTACTAATGAAATCATTCCAAAGGGTTTGGCATTGACTCTGTCTAACAATGCAGCCAGTGAGTCAACCATCTCAAGCACCATTGATGAATCTGCCTCAACTTGCACTAACCTCTCCCTCACTCCCTCTTCAGCCAAACTAACTGCTTTTGGACTCTTTGATCAACCGGGTCCAGCTCAGAATCACCAAGCCTTTGGATCGTTAATGGGACAATCTAGAGGGGATGTgagttttaacaagtttttgggTGCTTGGAACGGGGCATGTAAGGCTGAACCTGTGGGAAAGCTCATGGGTGTGGACCAGTCCAATTTTTCAGATGCAAACTCAGAAGTATCAGTATCTGAGTCAGTTGCCACCAATAGGTCCAATCTCTCAATTTCTGAGGAGAGTGAAACTGTGGGTTATAAGATTAGCATGCCATTCATTGATTTTCTTGGAGTAGGAGCTACTTCGCTAATTTGCTGA 1125 0.4258 MSSSHHFNVGESFSGDMSFFPSSLFVGSQTPPLSMGHGNGVEGPKSDMGLQILGPSMFQPQESRGTKRITDEMVENKNLCLKLGDEVEVKSPASGKNGYTKLCARGHWRPAEDEKLKELVAQYGPQNWNLIAEHLEGRSGKSCRLRWFNQLDPRINRKSFSEEEEERLLTAHKLYGNKWALIARLFPGRTDNAVKNHWHVIMARRQREQSSNVYRRRKPTTNEIIPKGLALTLSNNAASESTISSTIDESASTCTNLSLTPSSAKLTAFGLFDQPGPAQNHQAFGSLMGQSRGDVSFNKFLGAWNGACKAEPVGKLMGVDQSNFSDANSEVSVSESVATNRSNLSISEESETVGYKISMPFIDFLGVGATSLIC 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1704 374 SUPERFAMILY Homeodomain-like 105 198 IPR009057 -
Ssu4g1704 374 Pfam Myb-like DNA-binding domain 108 168 - -
Ssu4g1704 374 Gene3D - 105 156 - -
Ssu4g1704 374 ProSiteProfiles Myb-like domain profile. 105 151 IPR001005 -
Ssu4g1704 374 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 105 151 IPR017930 -
Ssu4g1704 374 PANTHER OS08G0435700 PROTEIN 76 370 - -
Ssu4g1704 374 PANTHER MYB PROTEIN-RELATED 76 370 - -
Ssu4g1704 374 CDD SANT 108 149 IPR001005 -
Ssu4g1704 374 Gene3D - 158 219 - -
Ssu4g1704 374 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 152 206 IPR017930 -
Ssu4g1704 374 ProSiteProfiles Myb-like domain profile. 152 202 IPR001005 -
Ssu4g1704 374 CDD SANT 159 199 IPR001005 -
Ssu4g1704 374 SMART sant 156 204 IPR001005 -
Ssu4g1704 374 SMART sant 104 153 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1704 Ssu-Chr4 30026697 30028199 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g1704 104 232 MYB Transcription Factor Family AT1G69560 73.239 1.92e-69 220
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Ssu4g1704 Myb_DNA-bind_6 6.2e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1704 K09422 - gmx:100791795 562.762