Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1694 ATGGGGAGGCCTCCTTGCTGTGACAAAGTTGGCATCAAGAAAGGTCCATGGACACCTGAGGAGGATATCATCCTTGTCTCTTACATCCAAGAACATGGTCCAGGAAATTGGAGATCAGTGCCTACTAATACTGGGTTGTCAAGGTGCAGCAAAAGTTGCAGGCTTAGATGGACTAATTACCTCAGGCCAGGAATCAAGAGAGGGAACTTCACTCCCCATGAGGAAGGAATGATAATTCATTTGCAAGCTCTACTGGGTAACAAATGGGCAGCCATAGCTTCCTACCTTCCACAAAGAACAGACAATGATATAAAGAATTATTGGAACACCCATctaaagaagaagctgaagaaatTTCAAGCAGCCTTAGATCCCCACTCAGCATCAGACCCAACAACCAGTGTTCAGTATCTACCAAAGAGCTTTAATGACAGAATAAGTTTAGATATCAGCAGCAACAACAATCATGCCTCATCCCTTAGGCTTAGTCAGTCTCAGTCCTCCACATATGCCTCAAGCACTGAGAACATCTCAAGACTCTTGGAAGGTTGGATGAGATCTTCCCCAAAACCACTCAAGGGAACCCAAGATGAGGAGCTCCAAAGCAATGATGATAACAACTTTGAAAGCACCAAGCTAGTGAAGTGTGCATCAGTGCCTGCTTTGAACCTTCATCTTCAgcacaaaagaaacaaagatgAGCAAGAGGGTGGTGTAGATATGGTGTCTCATGAAGAGTTTGATTCTATTTTGTCCTTTGAGAACCTAAACAATGCTGCTTGGGACAAGTCCACTTGTGATTCCGTGGCTGAAAAGAGTTCTGAAGCTGCTGCTGAATTTGCTCATGATATTATAGCTGCTGAGAGGAATAGGCAAAAATCTGAGAACAGGTAG 894 0.4217 MGRPPCCDKVGIKKGPWTPEEDIILVSYIQEHGPGNWRSVPTNTGLSRCSKSCRLRWTNYLRPGIKRGNFTPHEEGMIIHLQALLGNKWAAIASYLPQRTDNDIKNYWNTHLKKKLKKFQAALDPHSASDPTTSVQYLPKSFNDRISLDISSNNNHASSLRLSQSQSSTYASSTENISRLLEGWMRSSPKPLKGTQDEELQSNDDNNFESTKLVKCASVPALNLHLQHKRNKDEQEGGVDMVSHEEFDSILSFENLNNAAWDKSTCDSVAEKSSEAAAEFAHDIIAAERNRQKSENR 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1694 297 Gene3D - 69 134 - -
Ssu4g1694 297 CDD SANT 69 112 IPR001005 -
Ssu4g1694 297 MobiDBLite consensus disorder prediction 186 205 - -
Ssu4g1694 297 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Ssu4g1694 297 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Ssu4g1694 297 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
Ssu4g1694 297 CDD SANT 16 61 IPR001005 -
Ssu4g1694 297 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 116 IPR017930 -
Ssu4g1694 297 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Ssu4g1694 297 Gene3D - 13 66 - -
Ssu4g1694 297 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 273 - -
Ssu4g1694 297 SMART sant 66 114 IPR001005 -
Ssu4g1694 297 SMART sant 13 63 IPR001005 -
Ssu4g1694 297 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Ssu4g1694 297 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Ssu4g1694 297 PANTHER TRANSCRIPTION FACTOR MYB60 1 273 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1694 Ssu-Chr4 29821901 29823298 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g1694 1 119 MYB Transcription Factor Family AT5G62470 89.916 1.77e-81 248
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Ssu4g1694 Myb_DNA-binding 1.4e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1694 K09422 - gmx:100817854 447.203