Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1690 ATGGGAAGcagaaaggaagaagagaggAACGAGAAAATCATCAGAGGTCTCATGAAGCTTCCGCCCAATCGAAGATGCATCAACTGTAATAGTCTGGGTCCGCAATATGTTTGTACGAATTTCTGGACCTTCGTTTGCATGACATGCAGTGGAATACATCGTGAGTTTACCCATCGTGTGAAGTCTGTATCTATGGCAAAGTTCACTTCACAAGAAGTTGATGCTCTTCAAAATGGGGGTAACCAGCGTGCAAgggaaatatatttgaaaaattgggaCTTCCAAAGGCAGCGGTTGCCAGATAGCAGTAATGTTGATAAAATAAGAGAGTTTATAAGGAATATATATGTGGATCGAAGATATGCTGCAGTGAAGTCTTCTGATAAGCCTCCAAGAGATAGTCTTAGAATCCATGAAGATGATACAAGGCGTGCTAGTTCCTATCACTCATATTCTCAAAGTCCTCCATATGATTACCAATATGAAGATCAACGATATGGAAAACAAGCAGCTGCATTGACCAGGAAGCCTGGTTCAGATAAAGTTCGCTATGAAGGAAAGATAAGTAGTATCATCTTTAGTCCTGGTCGCTTCAGCGATCATGCATATGATGACACATTTGCAAATGAGGGATCTGGTCCAAGAATCTCTGACTTTTCTGTGTGTAATGGTGTTGAGCAATTTAAATCTGATGTTCAGCATTCTGGTACCTGTTCAAGTGAAGATGTACGGTCTCATGCAATAAGTACATCTTTGGAAACAAACTCCAAGAGAGATACAGATGGAATTCATCGTCCACAGAGAACTACTTCATTGGGATCAACAGACAGCAACCTGTCATCCTTAAGATCTTACAGTTCTGGTGgtttagttgattttttctCAGAACCATTCCAAGCTTCTGGACCCCGTCAGAATAAAGTGTCTTGTGCTCCACAACCATCTGATCTGGGAAGTACTGTTAGTTCTGATCTTTCTGAGGCACCAGTGGCACCCAAACCATTCTCTTCATCTGCTTCATCTATTGACCTTTTCCAGTTGCCAGCTGCACCCTCTCAGGCTACATCAGTGGATCTGTTTCAGTCATCTGCTTTATCTGCAATTCCATCTTTCAATGAGAGTCAACCTGCAAAAACATCCCAACCCTCATCTGTTGACTTTTTTATGGATCTTTCTCAGCAGCCATCTGCTGCAACCTCAAATGAGAAGTCACTGGAGTTGTCTGTCCCTAAAAATGAAGGATGGGCAACATTTGATACGCCTCAGCACACAACGTCTACTGCACAAGTAGAAATTCCAACAGCAGTACCTTCAACTGCTGACTCCTTGCAGGAAAGATTTGAtccatttttgaatttaaatgcaAATAAGCTATGGCCATCTTCTGAAACTTCTAGTATTAGTGTTCTTTCTTCAGTTACATCCAACTTATGGCATGATGGCATGTGGAATGGAGAAGAACAAGTTTCTGTTACAGCAACAAACACTCAACCATGGAATGCTTTTAAAGATTCTGCTACCTCTGTTCCTGTGGATGCCCTTAATCAAGGATTACAAATGCGTGATCTTCCATTAACTGATGATCAGTTTTTGGATTTAAGAGCTGAGGGATTGAATAAAGGTGGGATGCAAGGCATTGCTCCTGTTGCTGGGTTTGATCATGATCTTGCATCTCATTTTGTTAGTGGCTCATCATATCCTCCATCTGCATTTCCTCCAATGTCTCAATTGCAATTCCTTGATGTCACTTCTCTACAAGCTGCTCTGCCAGATTCCCAACTACCGCCCACCTTCCAAAGTGGTATTGCTGAACCATGGCTCCCTCAGAATACACTGAGCCCTTATGCCTCCTCTACAGGACAAGGTGGTTTGACATTCATGGCTGCACCACCACCAAGTTCTCAAATACTGAATATCCAGACGAATGGACCAGTTGCTTCTGTTGGGGGCAATCCCTTTGCATAG 1965 0.4107 MGSRKEEERNEKIIRGLMKLPPNRRCINCNSLGPQYVCTNFWTFVCMTCSGIHREFTHRVKSVSMAKFTSQEVDALQNGGNQRAREIYLKNWDFQRQRLPDSSNVDKIREFIRNIYVDRRYAAVKSSDKPPRDSLRIHEDDTRRASSYHSYSQSPPYDYQYEDQRYGKQAAALTRKPGSDKVRYEGKISSIIFSPGRFSDHAYDDTFANEGSGPRISDFSVCNGVEQFKSDVQHSGTCSSEDVRSHAISTSLETNSKRDTDGIHRPQRTTSLGSTDSNLSSLRSYSSGGLVDFFSEPFQASGPRQNKVSCAPQPSDLGSTVSSDLSEAPVAPKPFSSSASSIDLFQLPAAPSQATSVDLFQSSALSAIPSFNESQPAKTSQPSSVDFFMDLSQQPSAATSNEKSLELSVPKNEGWATFDTPQHTTSTAQVEIPTAVPSTADSLQERFDPFLNLNANKLWPSSETSSISVLSSVTSNLWHDGMWNGEEQVSVTATNTQPWNAFKDSATSVPVDALNQGLQMRDLPLTDDQFLDLRAEGLNKGGMQGIAPVAGFDHDLASHFVSGSSYPPSAFPPMSQLQFLDVTSLQAALPDSQLPPTFQSGIAEPWLPQNTLSPYASSTGQGGLTFMAAPPPSSQILNIQTNGPVASVGGNPFA 654
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1690 654 SUPERFAMILY ArfGap/RecO-like zinc finger 9 122 IPR037278 -
Ssu4g1690 654 Pfam Putative GTPase activating protein for Arf 12 123 IPR001164 GO:0005096
Ssu4g1690 654 PRINTS HIV Rev interacting protein signature 42 59 IPR001164 GO:0005096
Ssu4g1690 654 PRINTS HIV Rev interacting protein signature 23 42 IPR001164 GO:0005096
Ssu4g1690 654 PRINTS HIV Rev interacting protein signature 60 81 IPR001164 GO:0005096
Ssu4g1690 654 MobiDBLite consensus disorder prediction 302 326 - -
Ssu4g1690 654 MobiDBLite consensus disorder prediction 126 158 - -
Ssu4g1690 654 Gene3D Arf GTPase activating protein 2 131 IPR038508 -
Ssu4g1690 654 MobiDBLite consensus disorder prediction 233 278 - -
Ssu4g1690 654 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD14-RELATED 1 654 - -
Ssu4g1690 654 MobiDBLite consensus disorder prediction 233 256 - -
Ssu4g1690 654 MobiDBLite consensus disorder prediction 126 146 - -
Ssu4g1690 654 MobiDBLite consensus disorder prediction 302 333 - -
Ssu4g1690 654 SMART arf_gap_3 11 129 IPR001164 GO:0005096
Ssu4g1690 654 CDD ArfGap_AGFG 11 123 - -
Ssu4g1690 654 PANTHER ARFGAP/RECO-RELATED 1 654 IPR044820 GO:0005096
Ssu4g1690 654 ProSiteProfiles ARF GTPase-activating proteins domain profile. 11 129 IPR001164 GO:0005096
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1690 Ssu-Chr4 29777637 29787741 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g1690 14 116 C2H2 Transcription Factor Family AT4G05330 34.211 4.20e-12 66.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1690 K15044 - gmx:100817495 1050.81