Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1660 ATGTATCACGCAAAGAAATTTTCGCCGGCTAGCATGGTGCCACATAAAGCTCAAGGCGGTGCTGAACAACTTGCAAATGTTGGGGTTTTGGGTGGATCTGCTGTAAAAAATGCCCCACCTGCTGGGGGAAGTGGGAAACAACGTTTACGGTGGACATCTGATCTTCATGACCGTTTTGTGGATGCCATTACGCAACTTGGTGGACCAGATAGAGCAACACCAAAAGGTGTTCTTAGAGTGATGGGTGTTCCTGGACTGACCATTTATCATGTTAAAAGCCATTTACAGAAATATCGCCTTGCAAAGTTCTTGCCTGAATCACCAGCTGATGACTCTAAAGATGAGAAAAGGAATTCTGGAGACAGCATTTCTGGTGCAGATTCTTCTCCGGGATTGCCAATCAATGATGCCCTAAGAATGCAGATGGAGGTTCAGAAACGTCTGCATGAGCAGCTTGAGGTTCAAAAGCAGTTACAAATGAGAATTGAAGCACAGGGTAAATACTTGCAAAAAATCATAGAGGAACAGCAGAAACTAGGTAGTACCTTGACAACCTCGGATTTGTCCCATGATAAGCAAAATCATCCCCAGTCAGAGGCTTCTGGATCTAGTGATGCCCTTGCAAGCACTTTGTCTCCACATAAAAAACAGAGAATCGATGATGGTTCCAAGGATGGCTTCACTGCTTCCCAATTAAGAAAGACTGCACAAAAGCATGACTGCAATGTTGGTCAGTTGGATCCAAACTTGTATCATGATGCTGGGTTTGGATTTGATTTGGAGACAAAAAATGATGAAGATAAGGAGAGTGGACAGTAA 819 0.4371 MYHAKKFSPASMVPHKAQGGAEQLANVGVLGGSAVKNAPPAGGSGKQRLRWTSDLHDRFVDAITQLGGPDRATPKGVLRVMGVPGLTIYHVKSHLQKYRLAKFLPESPADDSKDEKRNSGDSISGADSSPGLPINDALRMQMEVQKRLHEQLEVQKQLQMRIEAQGKYLQKIIEEQQKLGSTLTTSDLSHDKQNHPQSEASGSSDALASTLSPHKKQRIDDGSKDGFTASQLRKTAQKHDCNVGQLDPNLYHDAGFGFDLETKNDEDKESGQ 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1660 272 Pfam Myb-like DNA-binding domain 49 99 IPR001005 -
Ssu4g1660 272 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 2 264 IPR044848 GO:0003700
Ssu4g1660 272 MobiDBLite consensus disorder prediction 106 121 - -
Ssu4g1660 272 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 46 101 IPR006447 GO:0003677
Ssu4g1660 272 MobiDBLite consensus disorder prediction 258 272 - -
Ssu4g1660 272 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 43 103 IPR017930 -
Ssu4g1660 272 SUPERFAMILY Homeodomain-like 45 100 IPR009057 -
Ssu4g1660 272 Pfam MYB-CC type transfactor, LHEQLE motif 133 178 IPR025756 -
Ssu4g1660 272 Coils Coil 135 155 - -
Ssu4g1660 272 MobiDBLite consensus disorder prediction 106 134 - -
Ssu4g1660 272 MobiDBLite consensus disorder prediction 183 211 - -
Ssu4g1660 272 PANTHER OS05G0491500 PROTEIN 2 264 - -
Ssu4g1660 272 Gene3D - 45 104 - -
Ssu4g1660 272 MobiDBLite consensus disorder prediction 183 272 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1660 Ssu-Chr4 28997960 29000916 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g1660 42 187 G2-like Transcription Factor Family AT4G28610 55.405 1.40e-50 169
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Ssu4g1660 Myb_DNA-binding 2.6e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1660 - - gmx:100783132 476.478