Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1659 ATGGGATCTCAAGGTGGGGCAATCCAAGAGCCAAAGACTGGCTCTTTGGCTAGGCAAGGGTCTTTGTACAATCTCACCCTTGATGAGGTGCAAAACCAGCTTGGAAATTTAGGGAAACCCTTAGGAAGCATGAATCTGGATGAGCTGCTCAAGAGTGTGTGGACTGCTGAATCTGGAACTGATGCATACATGCAGCATGGTCAGGTAGCTTCTGCTGGGCCATCTTTGAATCCACAAGGGAGCCTAACATTGTGTGGGGATGTTAGCAAGAAAACTATTGATGAGGTTTGGAGAGATATGCAGCAGAAGAAGAGTGCTAGTGAGGAAAGACAGCCTACGCTGGGTGAGATGACCCTGGAGGATTTCTTGGTGAAGGCTGGGGTGGCTACTGAATCTTTTTCTAGTGAGGATGGTGCTGTGGCTATGTCAGGGGTTGATTCCCAACACAACACATCACAGCATGCCCACTGGATGCAGTACCAGCTCACTTCAGTGCTGCAGcagccacaacaacaacatcaccaGCAAAATAATGTGATGCCGGGTTTTTCAGGTTTTATTGCTGGCCATGCTGTTCAACAGCATATTCCAGTTGTGGTGAATCCAGTTCTGGATGCAGGATACTCTGAAGCAATGCCATCTTCTTTGATGGGTGCCTTATCAGATTCACAAACTCCAGGTAGGAAAAGGGTTGCCTCAGGTAATGTGGTTGAGAAAACTGTAGAGAGGAGGCAGAAGAGGATGATTAAAAATAGGGAATCAGCAGCTCGGTCCCGGGCTAGAAAACagGCTTACACACAAGAACTGGAGATTAAAGTTTCGCATTTAGAAGAAGAGAATGAAAGGCTTAGAAGACAGAATGAGATAGAGAGGGTGTTGCCAAGTGTGCCACAGCCTGACCCTAAGCATCAGCTTCGCAGAACTAGTTCAGCCCCCGTTTGA 942 0.4628 MGSQGGAIQEPKTGSLARQGSLYNLTLDEVQNQLGNLGKPLGSMNLDELLKSVWTAESGTDAYMQHGQVASAGPSLNPQGSLTLCGDVSKKTIDEVWRDMQQKKSASEERQPTLGEMTLEDFLVKAGVATESFSSEDGAVAMSGVDSQHNTSQHAHWMQYQLTSVLQQPQQQHHQQNNVMPGFSGFIAGHAVQQHIPVVVNPVLDAGYSEAMPSSLMGALSDSQTPGRKRVASGNVVEKTVERRQKRMIKNRESAARSRARKQAYTQELEIKVSHLEEENERLRRQNEIERVLPSVPQPDPKHQLRRTSSAPV 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1659 313 PANTHER BZIP TRANSCRIPTION FACTOR 2 311 - -
Ssu4g1659 313 Pfam bZIP transcription factor 243 288 IPR004827 GO:0003700|GO:0006355
Ssu4g1659 313 CDD bZIP_plant_BZIP46 243 288 - -
Ssu4g1659 313 SMART brlzneu 239 311 IPR004827 GO:0003700|GO:0006355
Ssu4g1659 313 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 246 261 IPR004827 GO:0003700|GO:0006355
Ssu4g1659 313 SUPERFAMILY Leucine zipper domain 243 289 IPR046347 GO:0003700|GO:0006355
Ssu4g1659 313 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 241 286 IPR004827 GO:0003700|GO:0006355
Ssu4g1659 313 Coils Coil 266 293 - -
Ssu4g1659 313 Gene3D - 241 293 - -
Ssu4g1659 313 PANTHER CAMP-RESPONSE ELEMENT BINDING PROTEIN-RELATED 2 311 IPR043452 GO:0003700|GO:0045893
Ssu4g1659 313 MobiDBLite consensus disorder prediction 289 313 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1659 Ssu-Chr4 28984148 28987668 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g1659 1 313 bZIP Transcription Factor Family AT3G56850 57.975 8.22e-108 314
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Ssu4g1659 bZIP_1 5e-13 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1659 K14432 - gmx:100783666 505.753