Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1658 ATGGGGAGGAAGCGAAAGGTTGCACCGAAATCTTCTCAATCCGCTGAACCCCCACAGAAGCTCCACCAACCCGAACCCGACAATGCCCCTCACGAATACGAAGAAGTCGAAGAGGAAGTAGAGGAAGAAGAGGTAGAAGAAGaagtggaagaagaagaagaggaggaggaggaagaggaggaagaagaagacgaCGACGAGGCGCCACAGCAACAGCAACACCAAGAAGACGAAGACGAAGACCCGATCCAGAAGCTTCTGGAGCCCCTGAGCAAGGACCAGGTCCTGAACCTCCTGTGCGAGGCGGCGGCGAAGCACCGCGACGTGGCGGACCGGATCCGTAAGGCGGCGGACTCGGACCCCGTGCACCGGAAGATCTTCGTGCACGGGCTGGGGTGGGACACCACCGCCGGAACCCTGATCAGCGCGTTCCGGCAGTACGGCGAGATCGAGGACTGCAAGGCCGTCACCGACAAGGTCTCCGGCAAGTCCAAGGGCTACGGCTTCATCCTCTTCAAGACGCGCCGCGGCGCGCGCAACGCGCTCAAGCAGCCGCAGAAGAAGATCGGCAACCGCATGACGGCGTGCCAGCTGGCGTCCATCGGTCCcgtcaacaacaacaacagcaacaaccaGAGCCAGCCGGCTTCCGCGGCGGTGCCGGCTCCGGCGCCGGCTTCTTCGTCGGTTTCGGAGTACACGCAGAGGAAGATCTACGTGAGCAACAGTGCCGAGAGTGCGAAGAGGGCGTTGGAGGAGCCTCATAAGGAGTTCGAGGGGAATATTTTGCACTGCCAGAAGGCGATTGATGGGCCCAAGCCCGGgaagcagcagcagcagcacgGGAATGTTGCTCAGGCCCAGAGGGGGGCCCAGTTTCAGAGGAATGATGGTGCTAGCGCCGGTGGTtatgttgttggtggtggtggtgctgcGGCGGCGCAGCCGGGGCACTTGATGGCACCAGCCGGTCCGGGGATTGGATTTAATCAGGCGGCTGCTGCTCAGGCGGCCTTGAATCCAGCGCTTGGGCAGGCGTTGACGGCGCTGCTGGCATCGCAGGGGACATTGGGGCTGACGAATTTGTTGGGGAGTATTGGAACGAGTGCTGCAGTGAATCCTGGTGTTCCTGCTGCGGGGGCTGGAGTGCAGGGTGGGTACAGTGCTCAGCCGAATATAAGTCCGGGGGTGATAGGAGGATATGGGAGTCAGGTGGGGCTGCAGGCGGTGTATCCGAATCAGCAGGTAGGGCAGGGTGGTGGTTCTGGAAGAGGGCAGTATGGTGGTGGTGCTGCGCCTTACATGGGGCACTAG 1314 0.5624 MGRKRKVAPKSSQSAEPPQKLHQPEPDNAPHEYEEVEEEVEEEEVEEEVEEEEEEEEEEEEEEDDDEAPQQQQHQEDEDEDPIQKLLEPLSKDQVLNLLCEAAAKHRDVADRIRKAADSDPVHRKIFVHGLGWDTTAGTLISAFRQYGEIEDCKAVTDKVSGKSKGYGFILFKTRRGARNALKQPQKKIGNRMTACQLASIGPVNNNNSNNQSQPASAAVPAPAPASSSVSEYTQRKIYVSNSAESAKRALEEPHKEFEGNILHCQKAIDGPKPGKQQQQHGNVAQAQRGAQFQRNDGASAGGYVVGGGGAAAAQPGHLMAPAGPGIGFNQAAAAQAALNPALGQALTALLASQGTLGLTNLLGSIGTSAAVNPGVPAAGAGVQGGYSAQPNISPGVIGGYGSQVGLQAVYPNQQVGQGGGSGRGQYGGGAAPYMGH 437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1658 437 MobiDBLite consensus disorder prediction 201 227 - -
Ssu4g1658 437 MobiDBLite consensus disorder prediction 269 290 - -
Ssu4g1658 437 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 126 192 IPR000504 GO:0003723
Ssu4g1658 437 MobiDBLite consensus disorder prediction 417 437 - -
Ssu4g1658 437 PANTHER GEO13361P1-RELATED 243 437 - -
Ssu4g1658 437 PANTHER - 19 242 - -
Ssu4g1658 437 PANTHER - 243 437 - -
Ssu4g1658 437 PANTHER GEO13361P1-RELATED 19 242 - -
Ssu4g1658 437 MobiDBLite consensus disorder prediction 31 74 - -
Ssu4g1658 437 Gene3D - 26 214 IPR012677 -
Ssu4g1658 437 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 124 201 IPR000504 GO:0003723
Ssu4g1658 437 MobiDBLite consensus disorder prediction 276 290 - -
Ssu4g1658 437 SMART rrm1_1 125 197 IPR000504 GO:0003723
Ssu4g1658 437 Coils Coil 33 67 - -
Ssu4g1658 437 MobiDBLite consensus disorder prediction 201 218 - -
Ssu4g1658 437 SUPERFAMILY RNA-binding domain, RBD 123 209 IPR035979 GO:0003676
Ssu4g1658 437 MobiDBLite consensus disorder prediction 1 81 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1658 Ssu-Chr4 28957019 28958460 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g1658 77 230 C2H2 Transcription Factor Family AT2G19380 42.208 1.51e-35 137
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1658 K12741 - gmx:100784200 519.62