Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1644 ATGGAACACCATTTTGGTCAAGACGCTGCACCTGCATCCGGATCCTTTGATAAGACTAGGGTTTTAAATGTGAAGCCACTAAGAACTCTTGTTCCTGTGTTCCCTTCACCATCTAATCCTGCTTCATCTTCAACTCCACAAGGTGGTGCTCCTTTTGTCTGTGTTTCTCCGTCTGGTCCTTTCCCTTCTGGGGTTGCGCCGTTCTATCCTTTCTTTATCTCCCCGGAATCCCAGAGGCTCTCTGAACAGAATGCGCAAACCCCGACCGGTCAACGTGTGCCTGCAGCTCCAATATCTGCTGCTGTTCCAATTAATTCATTTAGGACACCAACTGGGGCTGCAAATGGAGATGTGGGCTCGTCGCGAAGGAGTGCCCGAAGTCGTGGACAAGTCACAGAGGAAGATGGCTACAGTAATGTTGAGATGGATGAAGTTGATGTAGAAGATGGAACTGGGACTGGGAGGTCAAAGCGTAAGTCGCAGAAGAAGGCAAAGGGACGGCGGAGTGGTGGTTCTGCTGATGTTGATCCGGATGCAGTGGCTGCCGATATTCTCAAATCACTTAACCCAATGGTTTTTGATGTACTGAATCAACCAGAAGGGAGCAGGGACTCAGTTGCATATACACTTATGATATATGAAGTGATGCGAAGAAAGCTTGGACAAATTGAAGATTCAACAAGGGCAGCTAACTCTGGAGCAAAACGGCCTGATTTGAAGGCAGGTACACTTATGATGAATAAAGGGATTCGGACCAACAGTAAGAAACGTATTGGAGCTGTGCCTGGTGTTGAGGTTGGGGATATTTTCTATTTCAGATTTGAATTGTGCTTAGTGGGTTTACATGCTCCTTCTATGGCTGGAATTGATTACATTGGTTCCAAAACCAGTCAAGAAGAAGAGCCGTTAGCTGTAAGTATTGTCTCATCTGGAGGGTATGAAGATAATGTGGAGGATGGGGATGTGCTGATTTACAGTGGCCAAGGTGGGGTTAACCGTGACAAGGGAGCAAGTGATCAGAAGCTTGAAAGGGGTAATCTTGCGTTGGAGAAGAGTGTGCATAGAGGTAATGAAGTAAGAGTAATTAGGGGTTTGAGGGATGTACAACATCCAACTGGGAAGGTATACGTCTACGATGGCctttacaaaattcaaaattcctGGGTGGAGAAAGCAAAATCTGGTTTCAATGTATTCAAGTATAAACTAGTCAGGTTACCTGGACAGCCTCAAGCATATATGATTTGGAAATCCATTCAACAATGGACTGAGAAATCTGCTTCAAGAGCGGGGGTTATATTGCCTGATCTTACTTCTGGGGCTGAAAATGTACCTGTTTGTCTCGTAAATGATGTTGATAACGAGAAGGGCCCTGCATATTTCACTTACATCCCAACTCTCAAGAATTTGAGGCCAACTGCTCCCGTGGATTCTTCTGCTGGATGTTCTTGTGTTGGTGGATGTCAACCTAACAATTTTAATTGTCCTTGCATTCAAAGGAATGGAGGCTATCTACCATATTCTGCAGCTTCGTTAATTGCAGACCTAAAATCTGTGATATATGAGTGTGGTCCTTCTTGTCAGTGTCCTCCTAATTGCCGAAATCGGGTTTCCCAAGGTGGCTTGAAATTTCGTTTGGAGGTTTTTAGAACCAAGAATAAAGGTTGGGGTCTTAGAGCATGGGATGCTATTCGTGCTGGAACTTTCATATGTGAGTATGCAGGGGAAGTCATAGATAATGCTAGAGTAGAGGAGCTTGGTGGTGACAATGAAGATGATTACATTTTTGATTCTACTCGCATTTATCAGCAACTGGAAGTTTTTCCTGGTGATACTGAAGCTCCAAAAATCCCATCCCCCCTTTATATATCAGCAATAAATGAAGGGAATGTTGCTCGGTTTATGAATCACAGCTGCTCTCCAAATGTATTATGGCGTCCCGTCATACGTGAAAACAAGAACGAGTCAGATCTCCACATTGCTTTTTATGCAATTAGACATATCCCTCCTATGATGGAGTTAACTTATGATTATGGGATTGTTCTTCCTCTCAAAGTAGGTCAGAGGAAAAAGAAATGCTTATGTGGATCTGGGAAATGCAGGGGttacttttgttaa 2118 0.4353 MEHHFGQDAAPASGSFDKTRVLNVKPLRTLVPVFPSPSNPASSSTPQGGAPFVCVSPSGPFPSGVAPFYPFFISPESQRLSEQNAQTPTGQRVPAAPISAAVPINSFRTPTGAANGDVGSSRRSARSRGQVTEEDGYSNVEMDEVDVEDGTGTGRSKRKSQKKAKGRRSGGSADVDPDAVAADILKSLNPMVFDVLNQPEGSRDSVAYTLMIYEVMRRKLGQIEDSTRAANSGAKRPDLKAGTLMMNKGIRTNSKKRIGAVPGVEVGDIFYFRFELCLVGLHAPSMAGIDYIGSKTSQEEEPLAVSIVSSGGYEDNVEDGDVLIYSGQGGVNRDKGASDQKLERGNLALEKSVHRGNEVRVIRGLRDVQHPTGKVYVYDGLYKIQNSWVEKAKSGFNVFKYKLVRLPGQPQAYMIWKSIQQWTEKSASRAGVILPDLTSGAENVPVCLVNDVDNEKGPAYFTYIPTLKNLRPTAPVDSSAGCSCVGGCQPNNFNCPCIQRNGGYLPYSAASLIADLKSVIYECGPSCQCPPNCRNRVSQGGLKFRLEVFRTKNKGWGLRAWDAIRAGTFICEYAGEVIDNARVEELGGDNEDDYIFDSTRIYQQLEVFPGDTEAPKIPSPLYISAINEGNVARFMNHSCSPNVLWRPVIRENKNESDLHIAFYAIRHIPPMMELTYDYGIVLPLKVGQRKKKCLCGSGKCRGYFC 705
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1644 705 Pfam SAD/SRA domain 258 409 IPR003105 -
Ssu4g1644 705 ProSiteProfiles Pre-SET domain profile. 480 541 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Ssu4g1644 705 Pfam SET domain 555 679 IPR001214 GO:0005515
Ssu4g1644 705 MobiDBLite consensus disorder prediction 102 176 - -
Ssu4g1644 705 ProSiteProfiles YDG domain profile. 259 405 IPR003105 -
Ssu4g1644 705 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 12 704 - -
Ssu4g1644 705 Pfam Pre-SET motif 438 536 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Ssu4g1644 705 Gene3D - 242 426 IPR036987 -
Ssu4g1644 705 SUPERFAMILY SET domain 420 685 IPR046341 -
Ssu4g1644 705 SMART G9a_1 254 409 IPR003105 -
Ssu4g1644 705 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 109 704 IPR025794 GO:0016571
Ssu4g1644 705 ProSiteProfiles Post-SET domain profile. 689 705 IPR003616 -
Ssu4g1644 705 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE 12 704 - -
Ssu4g1644 705 MobiDBLite consensus disorder prediction 104 134 - -
Ssu4g1644 705 Gene3D SET domain 427 704 IPR046341 -
Ssu4g1644 705 ProSiteProfiles SET domain profile. 544 679 IPR001214 GO:0005515
Ssu4g1644 705 SMART set_7 544 685 IPR001214 GO:0005515
Ssu4g1644 705 SUPERFAMILY PUA domain-like 241 424 IPR015947 -
Ssu4g1644 705 SMART preset_2 434 528 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1644 Ssu-Chr4 28686257 28688374 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g1644 6 704 Su(var)3-9 homologs AT1G73100 48.619 0.0 622
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Ssu4g1644 SAD_SRA 9.9e-51 CL0178
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1644 K24405 - gmx:100786650 1296.95