Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1637 atggaacagcagcaacaacagcaacaacagcgCCACGTCAGCAGTGGCGGAACTAGCAATCCCGTGCTGCGGTGCCCCACGGTGCGCGCGCTCCCCTTCGCCCGCCTCATCGCCGCGGACCGCCACCGCCTCTTACTCTCCGACTGCGCGGACCGCCGATCGGACGACGACGGCGACGGCGACGGCGGCGAGTGCGAGTACTCGAGGGCGGTGCTGGTGCTGGACATGGTGTGGAACCTGGCCTTCGTGGTGGTGGCCGCCGGCGTGCTCCTCTCGACGCTCCGCGAGCGGCCGTCCACGCCGCTGAGGCTCTGGCTCTGCGGCTACGCCGTCGAGTGCGCCCTTCACATGGCCTTCGTCTACTTCGAGTTTCGAACCGCAATTCGCGATTCCGCGTCTCTCACTACCTATACCATTGTGAAGAAGTTAGAGCCTGTGAACACTCTGGCATCATCTGTTTGGTGGGTGTTTGGATTTTATTGGATTGTTGTGGGTGGCCAAGCACTTTTGGAAGATTCTCCGCGTCTCTACTGGTTAACAGTGGTCTTTCTAGCCTTTGacgtattttttattatcttttgcaTTGGGATGGCCTGTATAGTTTTCCTTGCTCTCTTCTGCATCATCCCAATAATAGCACTAGCTTATGCTATGAGAATCAGAGAAGGCGCATCAGAAGAAGATATCAGGTCACTTCCTAAGTATAGGTTTAGTCAGTCAAATTCATTGGTGATGGTTGATGACAACAAGAAGCAACTTGTTAAAGCAAGAGTAGATTCATGCAATGGAAGCCATATGAGTGAACTTTCTCTCCATCCAGATGATTCTGAATGCTGTATCTGCCTATGTCCATATGTTGATGGAGCAGAACTGCATCGCCTTCCCTGTACCCACCATTTTCATTGTGGATGCATCAGCCGTTGGCTTCGGACAAAAGCAACCTGCCCGCTCTGCAAATTTAATATCCTTAGAGGTGATACATTGGTTTGA 990 0.5051 MEQQQQQQQQRHVSSGGTSNPVLRCPTVRALPFARLIAADRHRLLLSDCADRRSDDDGDGDGGECEYSRAVLVLDMVWNLAFVVVAAGVLLSTLRERPSTPLRLWLCGYAVECALHMAFVYFEFRTAIRDSASLTTYTIVKKLEPVNTLASSVWWVFGFYWIVVGGQALLEDSPRLYWLTVVFLAFDVFFIIFCIGMACIVFLALFCIIPIIALAYAMRIREGASEEDIRSLPKYRFSQSNSLVMVDDNKKQLVKARVDSCNGSHMSELSLHPDDSECCICLCPYVDGAELHRLPCTHHFHCGCISRWLRTKATCPLCKFNILRGDTLV 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1637 329 MobiDBLite consensus disorder prediction 1 20 - -
Ssu4g1637 329 PANTHER TARGET OF ERK KINASE MPK-1 1 329 - -
Ssu4g1637 329 PANTHER RING-FINGER UBIQUITIN LIGASE 1 329 - -
Ssu4g1637 329 Pfam Ring finger domain 277 319 IPR001841 -
Ssu4g1637 329 ProSiteProfiles Zinc finger RING-type profile. 278 319 IPR001841 -
Ssu4g1637 329 SMART ring_2 278 318 IPR001841 -
Ssu4g1637 329 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 255 323 IPR013083 -
Ssu4g1637 329 SUPERFAMILY RING/U-box 271 323 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1637 Ssu-Chr4 28400292 28405009 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g1637 67 326 C3H Transcription Factor Family AT1G68070 46.953 5.75e-88 266
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1637 - - gmx:100806994 560.836