Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1627 ATGGGAAAGGCCGAAGAAGAACAGCAACCTCTGCCTCGGTCCGAGGATCCGCCGCGGAATGCGGAGAGGGAGTGTCGGTGCCGGTGTTCTCGGATTCGGAAACTCGTCGGCGTCAGATGCGCCCTCGTGCTGGTCCTGTCGGTCGCGGTGTTCCTCTCCGCGGCGTTTTGGTTGCCCCCTTTTCTTCGCCTCGCGGATCGGGGGAATCTGCATGGAGGTTCCAGATTCAAAGGTCATGATATTGTTGCAAGCTTTATCGTTAATAAATCTGTCTCTGTGCTAGAAGATAACAAATTTCAGCTCGCGAATGAAATTTTAGATGAGATAGATGCTCCCTCTAGCAAAGTAGCCATCTTGTCTCTTGATCCCTTACCTGGGCCAAACAAGACAAGAGTGATTTTTGCAGTTGATCCTGATGATAAATACACAGAAATGTCTTCAGCTGTCATCAGTTTGATAAGAGCATCATTTACATCCCTGGTTATACACCAATCAATTCTCCAGCTTACTTCTTCATCCTTGTTTGGAGATCCCTACTTCTTTGAAGTGCTGAAATTTAAGGGAGGAATTACTATAATTCCGCAACAGAATGCATTTCCTCTGCAGAAAGGGCAAGCAGAATTCAGCTTTAAGTTGAATTTCCCCATTTATCAAATACAATCAAATTTTAATGAGCTTACTAGTCAGCTAAAGTCTGGATTATATCTGACATCCTTCGAGAACTTGTATATCAACTTGTCGAATTCTGAAGGTTCAACAGTAGATGCCCCTACTGTTGTTCAGTCATCTGTTCTACTTGCAGTTGGGATTACTCCATCTAAAGAGAGGCTAAAGCAACTGGCACAAACCATCATGGGACCTCATAATCTAGGCTTGAATAACACTCAATTTGGTAGGGTTAAGCAGGTCCGACTTTCATCCATCTTGCAACATTCCCTTCATGGCAATGATGGTAGTGGCTCTGCATGGTCACCTTCTCCTGCTCCTCTGCCACATCCTCCacagcaccaccaccaccatcaacaccggcatcatcatcatcaccatgaTGCCCATCTAACTCCTGCAACTTCTCCTGTACCCATGTCTATACATGTACCTGcaccaacaccaacaccaacaccaacaccaaCACCTACACATACATCTACACCTACACCTACACCTACACCTAGGGAGGGTGTGACTCCACCCAAGGTTGGTTCTCCTGCTGCTGCAAAAAGTGCGCCTGCACCAGGGAAGATATCTCAATCTCAGCCTCCTAATTGTCCATTTGGTTATAGAAAAAGGTCTACCCATAATTCTGGAAAGCATGCTCATCCTCCAACACCTGCAGTTGCCCCTATTATTAATCCACATTATCCTGTTCCTGTCGCATCGCCAAAACCACAGGCTGAACCCCCAGTACATGTCTCTCATTCAGTACCAACTTTGAGTCCTATACCAAATGTAGCTTTTGCTCATGCTGAGCCCCCTCCTAAGAATGAACCAGCTGCAAAACATTCTCAAACCCATTTTCATGGGCCACCATTATCTTCATCTTCTGCAGGTTGTCTTAGAACTGTTAAATGGGCATCTTTAATGCTTACAGTACTTGTGTTATGTGTATATCATAGTACTGGAATTGTATCTCTCGGCCAGACAAACTAG 1650 0.4303 MGKAEEEQQPLPRSEDPPRNAERECRCRCSRIRKLVGVRCALVLVLSVAVFLSAAFWLPPFLRLADRGNLHGGSRFKGHDIVASFIVNKSVSVLEDNKFQLANEILDEIDAPSSKVAILSLDPLPGPNKTRVIFAVDPDDKYTEMSSAVISLIRASFTSLVIHQSILQLTSSSLFGDPYFFEVLKFKGGITIIPQQNAFPLQKGQAEFSFKLNFPIYQIQSNFNELTSQLKSGLYLTSFENLYINLSNSEGSTVDAPTVVQSSVLLAVGITPSKERLKQLAQTIMGPHNLGLNNTQFGRVKQVRLSSILQHSLHGNDGSGSAWSPSPAPLPHPPQHHHHHQHRHHHHHHDAHLTPATSPVPMSIHVPAPTPTPTPTPTPTHTSTPTPTPTPREGVTPPKVGSPAAAKSAPAPGKISQSQPPNCPFGYRKRSTHNSGKHAHPPTPAVAPIINPHYPVPVASPKPQAEPPVHVSHSVPTLSPIPNVAFAHAEPPPKNEPAAKHSQTHFHGPPLSSSSAGCLRTVKWASLMLTVLVLCVYHSTGIVSLGQTN 549
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1627 549 MobiDBLite consensus disorder prediction 312 444 - -
Ssu4g1627 549 PANTHER HYDROXYPROLINE-RICH GLYCOPROTEIN FAMILY PROTEIN 1 533 - -
Ssu4g1627 549 MobiDBLite consensus disorder prediction 412 429 - -
Ssu4g1627 549 MobiDBLite consensus disorder prediction 362 396 - -
Ssu4g1627 549 MobiDBLite consensus disorder prediction 1 21 - -
Ssu4g1627 549 PANTHER F20B24.21 1 533 - -
Ssu4g1627 549 MobiDBLite consensus disorder prediction 333 351 - -
Ssu4g1627 549 MobiDBLite consensus disorder prediction 491 512 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1627 Ssu-Chr4 28228749 28233110 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g1627 453 532 C3H Transcription Factor Family AT3G10810 36.250 5.12e-06 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1627 - - gmx:100792490 804.283